Alternative splicing at the intersection of biological timing, development, and stress responses

D Staiger, JWS Brown - The Plant Cell, 2013 - academic.oup.com
High-throughput sequencing for transcript profiling in plants has revealed that alternative
splicing (AS) affects a much higher proportion of the transcriptome than was previously …

[HTML][HTML] Alternative splicing in plants–coming of age

NH Syed, M Kalyna, Y Marquez, A Barta… - Trends in plant …, 2012 - cell.com
More than 60% of intron-containing genes undergo alternative splicing (AS) in plants. This
number will increase when AS in different tissues, developmental stages, and environmental …

Arabidopsis MYB4 plays dual roles in flavonoid biosynthesis

XC Wang, J Wu, ML Guan, CH Zhao, P Geng… - The Plant …, 2020 - Wiley Online Library
Flavonoids are major secondary metabolites derived from the plant phenylpropanoid
pathway that play important roles in plant development and also have benefits for human …

Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome

CPG Calixto, W Guo, AB James, NA Tzioutziou… - The Plant …, 2018 - academic.oup.com
Plants have adapted to tolerate and survive constantly changing environmental conditions
by reprogramming gene expression The dynamics of the contribution of alternative splicing …

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

R Zhang, CPG Calixto, Y Marquez… - Nucleic acids …, 2017 - academic.oup.com
Alternative splicing generates multiple transcript and protein isoforms from the same gene
and thus is important in gene expression regulation. To date, RNA-sequencing (RNA-seq) is …

Long noncoding RNA modulates alternative splicing regulators in Arabidopsis

F Bardou, F Ariel, CG Simpson, N Romero-Barrios… - Developmental cell, 2014 - cell.com
Alternative splicing (AS) of pre-mRNA represents a major mechanism underlying increased
transcriptome and proteome complexity. Here, we show that the nuclear speckle RNA …

Alternative splicing in plant genes: a means of regulating the environmental fitness of plants

X Shang, Y Cao, L Ma - International journal of molecular sciences, 2017 - mdpi.com
Gene expression can be regulated through transcriptional and post-transcriptional
mechanisms. Transcription in eukaryotes produces pre-mRNA molecules, which are …

Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination

R Narsai, Q Gouil, D Secco, A Srivastava… - Genome biology, 2017 - Springer
Background Seed germination involves progression from complete metabolic dormancy to a
highly active, growing seedling. Many factors regulate germination and these interact …

ABA mediates plant development and abiotic stress via alternative splicing

X Yang, Z Jia, Q Pu, Y Tian, F Zhu, Y Liu - International Journal of …, 2022 - mdpi.com
Alternative splicing (AS) exists in eukaryotes to increase the complexity and adaptability of
systems under biophysiological conditions by increasing transcriptional and protein …

SKIP Is a Component of the Spliceosome Linking Alternative Splicing and the Circadian Clock in Arabidopsis

X Wang, F Wu, Q Xie, H Wang, Y Wang, Y Yue… - The Plant …, 2012 - academic.oup.com
Circadian clocks generate endogenous rhythms in most organisms from cyanobacteria to
humans and facilitate entrainment to environmental diurnal cycles, thus conferring a fitness …