Evolution of microbial genomics: conceptual shifts over a quarter century

EV Koonin, KS Makarova, YI Wolf - Trends in microbiology, 2021 - cell.com
Prokaryote genomics started in earnest in 1995, with the complete sequences of two small
bacterial genomes, those of Haemophilus influenzae and Mycoplasma genitalium. During …

Microbiological and molecular insights on rare Actinobacteria harboring bioactive prospective

DH Amin, NA Abdallah, A Abolmaaty, S Tolba… - Bulletin of the National …, 2020 - Springer
Background Actinobacteria is as a group of advanced filamentous bacteria. Rare
Actinobacteria are of special interest as they are rarely isolated from the environments. They …

Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in …

SD Brown, S Nagaraju, S Utturkar, S De Tissera… - Biotechnology for …, 2014 - Springer
Background Clostridium autoethanogenum strain JA1-1 (DSM 10061) is an acetogen
capable of fermenting CO, CO 2 and H 2 (eg from syngas or waste gases) into biofuel …

Exploring the risks of phage application in the environment

S Meaden, B Koskella - Frontiers in microbiology, 2013 - frontiersin.org
Interest in using bacteriophages to control the growth and spread of bacterial pathogens is
being revived in the wake of widespread antibiotic resistance. However, little is known about …

Detection, Characterization, and Typing of Shiga Toxin-Producing Escherichia coli

BD Parsons, N Zelyas, BM Berenger… - Frontiers in microbiology, 2016 - frontiersin.org
Shiga toxin-producing Escherichia coli (STEC) are responsible for gastrointestinal diseases
reported in numerous outbreaks around the world. Given the public health importance of …

Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production …

E Franz, P Delaquis, S Morabito, L Beutin… - International journal of …, 2014 - Elsevier
The rates of foodborne disease caused by gastrointestinal pathogens continue to be a
concern in both the developed and developing worlds. The growing world population, the …

A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria

E Aun, A Brauer, V Kisand, T Tenson… - PLoS computational …, 2018 - journals.plos.org
We have developed an easy-to-use and memory-efficient method called PhenotypeSeeker
that (a) identifies phenotype-specific k-mers,(b) generates ak-mer-based statistical model for …

Comparative genome analysis reveals key genetic factors associated with probiotic property in Enterococcus faecium strains

VC Ghattargi, MA Gaikwad, BS Meti, YS Nimonkar… - BMC genomics, 2018 - Springer
Background Enterococcus faecium though commensal in the human gut, few strains provide
a beneficial effect to humans as probiotics while few are responsible for the nosocomial …

[HTML][HTML] Genome analysis reveals probiotic propensities of Paenibacillus polymyxa HK4

R Soni, S Nanjani, H Keharia - Genomics, 2021 - Elsevier
The legislations on the usage of antibiotics as growth promoters and prophylactic agents
have compelled to develop alternative tools to upsurge the animal protection and contain …

Genomic comparison of diverse Salmonella serovars isolated from swine

SK Gupta, P Sharma, EA McMillan, CR Jackson… - PLoS …, 2019 - journals.plos.org
Food animals act as a reservoir for many foodborne pathogens. Salmonella enterica is one
of the leading pathogens that cause food borne illness in a broad host range including …