Evolution and diversity of assembly-line polyketide synthases: Focus review

A Nivina, KP Yuet, J Hsu, C Khosla - Chemical reviews, 2019 - ACS Publications
Assembly-line polyketide synthases (PKSs) are among the most complex protein
machineries known in nature, responsible for the biosynthesis of numerous compounds …

Natural strategies for the spatial optimization of metabolism in synthetic biology

CM Agapakis, PM Boyle, PA Silver - Nature chemical biology, 2012 - nature.com
Metabolism is a highly interconnected web of chemical reactions that power life. Though the
stoichiometry of metabolism is well understood, the multidimensional aspects of metabolic …

Identification of direct residue contacts in protein–protein interaction by message passing

M Weigt, RA White, H Szurmant… - Proceedings of the …, 2009 - National Acad Sciences
Understanding the molecular determinants of specificity in protein–protein interaction is an
outstanding challenge of postgenome biology. The availability of large protein databases …

Genetic engineering of modular PKSs: from combinatorial biosynthesis to synthetic biology

KJ Weissman - Natural product reports, 2016 - pubs.rsc.org
Covering: up to 2015 Multienzyme polyketide synthases (PKSs) are molecular-scale
assembly lines which construct complex natural products in bacteria. The underlying …

Metabolic pathway assembly using docking domains from type I cis-AT polyketide synthases

X Sun, Y Yuan, Q Chen, S Nie, J Guo, Z Ou… - Nature …, 2022 - nature.com
Engineered metabolic pathways in microbial cell factories often have no natural
organization and have challenging flux imbalances, leading to low biocatalytic efficiency …

SBSPKS: structure based sequence analysis of polyketide synthases

S Anand, MVR Prasad, G Yadav, N Kumar… - Nucleic acids …, 2010 - academic.oup.com
Polyketide synthases (PKSs) catalyze biosynthesis of a diverse family of pharmaceutically
important secondary metabolites. Bioinformatics analysis of sequence and structural …

CLUSEAN: a computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters

T Weber, C Rausch, P Lopez, I Hoof, V Gaykova… - Journal of …, 2009 - Elsevier
Bacterial secondary metabolites are an important source of antimicrobial and cytostatic
drugs. These molecules are often synthesized in a stepwise fashion by multimodular …

Accurate prediction of protein–protein interactions from sequence alignments using a Bayesian method

L Burger, E Van Nimwegen - Molecular systems biology, 2008 - embopress.org
Accurate and large‐scale prediction of protein–protein interactions directly from amino‐acid
sequences is one of the great challenges in computational biology. Here we present a new …

Steps towards the synthetic biology of polyketide biosynthesis

M Cummings, R Breitling, E Takano - FEMS microbiology letters, 2014 - academic.oup.com
Nature is providing a bountiful pool of valuable secondary metabolites, many of which
possess therapeutic properties. However, the discovery of new bioactive secondary …

Cyanobacterial polyketide synthase docking domains: a tool for engineering natural product biosynthesis

JR Whicher, SS Smaga, DA Hansen, WC Brown… - Chemistry & biology, 2013 - cell.com
Modular type I polyketide synthases (PKSs) are versatile biosynthetic systems that initiate,
successively elongate, and modify acyl chains. Intermediate transfer between modules is …