Antibiotic resistance in soil-plant systems: A review of the source, dissemination, influence factors, and potential exposure risks

R Xiao, D Huang, L Du, B Song, L Yin, Y Chen… - Science of the Total …, 2023 - Elsevier
As an emerging environmental contaminant, the widespread of antibiotic resistance has
caused a series of environmental issues and human health concerns. A load of antibiotic …

Progress and prospects of mycorrhizal fungal diversity in orchids

T Li, W Yang, S Wu, MA Selosse, J Gao - Frontiers in Plant Science, 2021 - frontiersin.org
Orchids form mycorrhizal symbioses with fungi in natural habitats that affect their seed
germination, protocorm growth, and adult nutrition. An increasing number of studies …

Specialized metabolic functions of keystone taxa sustain soil microbiome stability

W Xun, Y Liu, W Li, Y Ren, W Xiong, Z Xu, N Zhang… - Microbiome, 2021 - Springer
Background The relationship between biodiversity and soil microbiome stability remains
poorly understood. Here, we investigated the impacts of bacterial phylogenetic diversity on …

Soil pH and temperature regulate assembly processes of abundant and rare bacterial communities in agricultural ecosystems

S Jiao, Y Lu - Environmental Microbiology, 2020 - Wiley Online Library
The factors determining stochastic and deterministic processes that drive microbial
community structure, specifically the balance of abundant and rare bacterial taxa, remain …

Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics

C Gao, L Montoya, L Xu, M Madera… - Nature …, 2020 - nature.com
Community assembly of crop-associated fungi is thought to be strongly influenced by
deterministic selection exerted by the plant host, rather than stochastic processes. Here we …

Mariculture affects antibiotic resistome and microbiome in the coastal environment

LX He, LY He, FZ Gao, M Zhang, J Chen, WL Jia… - Journal of Hazardous …, 2023 - Elsevier
Antibiotics are increasingly used and released into the marine environment due to the rapid
development of mariculture, resulting in spread of antibiotic resistance. The pollution …

Ab initio protein structure assembly using continuous structure fragments and optimized knowledge‐based force field

D Xu, Y Zhang - Proteins: Structure, Function, and …, 2012 - Wiley Online Library
Ab initio protein folding is one of the major unsolved problems in computational biology
owing to the difficulties in force field design and conformational search. We developed a …

Environmental adaptation is stronger for abundant rather than rare microorganisms in wetland soils from the Qinghai‐Tibet Plateau

W Wan, GM Gadd, Y Yang, W Yuan, J Gu… - Molecular …, 2021 - Wiley Online Library
Disentangling the biogeographic patterns of rare and abundant microbes is essential in
order to understand the generation and maintenance of microbial diversity with respect to …

Linking bacterial-fungal relationships to microbial diversity and soil nutrient cycling

S Jiao, Z Peng, J Qi, J Gao, G Wei - Msystems, 2021 - Am Soc Microbiol
Biodiversity is important for supporting ecosystem functioning. To evaluate the factors
contributing to the strength of microbial diversity-function relationships in complex terrestrial …

High salinity inhibits soil bacterial community mediating nitrogen cycling

X Li, A Wang, W Wan, X Luo, L Zheng… - Applied and …, 2021 - Am Soc Microbiol
Salinization is considered a major threat to soil fertility and agricultural productivity
throughout the world. Soil microbes play a crucial role in maintaining ecosystem stability and …