Authenticity and typicity of traditional cheeses: A review on geographical origin authentication methods

M Cardin, B Cardazzo, J Mounier, E Novelli, M Coton… - Foods, 2022 - mdpi.com
Food fraud, corresponding to any intentional action to deceive purchasers and gain an
undue economical advantage, is estimated to result in a 10 to 65 billion US dollars/year …

Establishing microbial composition measurement standards with reference frames

JT Morton, C Marotz, A Washburne, J Silverman… - Nature …, 2019 - nature.com
Differential abundance analysis is controversial throughout microbiome research. Gold
standard approaches require laborious measurements of total microbial load, or absolute …

A review of microscopy and comparative molecular-based methods to characterize “Plastisphere” communities

C De Tender, C Schlundt, LI Devriese, TJ Mincer… - Analytical …, 2017 - pubs.rsc.org
Plastic is currently the most abundant form of debris in the ocean. Since the early 70's,
investigators have recognized the presence of life such as pennate diatoms, bryozoans and …

Compost amendment maintains soil structure and carbon storage by increasing available carbon and microbial biomass in agricultural soil–A six-year field study

D Wang, JY Lin, JM Sayre, R Schmidt, SJ Fonte… - Geoderma, 2022 - Elsevier
Soil organic amendments in agricultural production can benefit crop production and a wide
range of soil properties, including soil aggregation. Soil aggregate formation is largely …

[HTML][HTML] The effect of oxytetracycline treatment on the gut microbiome community dynamics in rainbow trout (Oncorhynchus mykiss) over time

CJ Payne, JF Turnbull, S MacKenzie, M Crumlish - Aquaculture, 2022 - Elsevier
Antibiotic compounds play an important role in the control of bacteria disease outbreaks on
fish farms. Yet, the impact of commercially licensed antibiotics on the diversity and …

The role of tissue‐specific microbiota in initial establishment success of P acific oysters

A Lokmer, S Kuenzel, JF Baines… - Environmental …, 2016 - Wiley Online Library
Microbiota can have positive and negative effects on hosts depending on the environmental
conditions. Therefore, it is important to decipher host–microbiota–environment interactions …

Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach

A Arfken, B Song, JS Bowman, M Piehler - PloS one, 2017 - journals.plos.org
The eastern oyster (Crassostrea virginica) is a foundation species providing significant
ecosystem services. However, the roles of oyster microbiomes have not been integrated into …

Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter?

V Vasselon, I Domaizon, F Rimet… - Freshwater …, 2017 - journals.uchicago.edu
Current freshwater biomonitoring with diatoms is based on microscopic examination of the
morphology of their silica skeleton. This standardized approach is time consuming and …

Gut microbiota of dung beetles correspond to dietary specializations of adults and larvae

SP Shukla, JG Sanders, MJ Byrne… - Molecular ecology, 2016 - Wiley Online Library
Vertebrate dung is central to the dung beetle life cycle, constituting food for adults and a
protective and nutritive refuge for their offspring. Adult dung beetles have soft mandibles and …

Optimal extraction methods for the simultaneous analysis of DNA from diverse organisms and sample types

SM Hermans, HL Buckley, G Lear - Molecular ecology …, 2018 - Wiley Online Library
Using environmental DNA (eDNA) to assess the distribution of micro‐and macroorganisms
is becoming increasingly popular. However, the comparability and reliability of these studies …