Fuzziness and frustration in the energy landscape of protein folding, function, and assembly

S Gianni, MI Freiberger, P Jemth… - Accounts of chemical …, 2021 - ACS Publications
Conspectus Are all protein interactions fully optimized? Do suboptimal interactions
compromise specificity? What is the functional impact of frustration? Why does evolution not …

Hyperpolarized water as universal sensitivity booster in biomolecular NMR

C Hilty, D Kurzbach, L Frydman - Nature protocols, 2022 - nature.com
NMR spectroscopy is the only method to access the structural dynamics of biomolecules at
high (atomistic) resolution in their native solution state. However, this method's low …

Fuzziness in protein interactions—a historical perspective

M Fuxreiter - Journal of molecular biology, 2018 - Elsevier
The proposal that coupled folding to binding is not an obligatory mechanism for intrinsically
disordered (ID) proteins was put forward 10 years ago. The notion of fuzziness implies that …

[HTML][HTML] Sequence-based prediction of fuzzy protein interactions

M Miskei, A Horvath, M Vendruscolo… - Journal of molecular …, 2020 - Elsevier
It is becoming increasingly recognised that disordered proteins may be fuzzy, in that they
can exhibit a wide variety of binding modes. In addition to the well-known process of folding …

Application and methodology of dissolution dynamic nuclear polarization in physical, chemical and biological contexts

S Jannin, JN Dumez, P Giraudeau… - Journal of Magnetic …, 2019 - Elsevier
Dissolution dynamic nuclear polarization (d-DNP) is a versatile method to enhance nuclear
magnetic resonance (NMR) spectroscopy. It boosts signal intensities by four to five orders of …

Is protein context responsible for peptide-mediated interactions?

P Zhou, Q Miao, F Yan, Z Li, Q Jiang, L Wen… - Molecular Omics, 2019 - pubs.rsc.org
Many cell signaling pathways are orchestrated by the weak, transient, and reversible protein–
protein interactions that are mediated by the binding of a short peptide segment in one …

The ambivalent role of proline residues in an intrinsically disordered protein: from disorder promoters to compaction facilitators

B Mateos, C Conrad-Billroth, M Schiavina… - Journal of molecular …, 2020 - Elsevier
Intrinsically disordered proteins (IDPs) carry out many biological functions. They lack a
stable three-dimensional structure, but rather adopt many different conformations in dynamic …

The mechanism of Hsp90-induced oligomerizaton of Tau

S Weickert, M Wawrzyniuk, LH John, SGD Rüdiger… - Science …, 2020 - science.org
Aggregation of the microtubule-associated protein Tau is a hallmark of Alzheimer's disease
with Tau oligomers suspected as the most toxic agent. Tau is a client of the molecular …

FuzDB: database of fuzzy complexes, a tool to develop stochastic structure-function relationships for protein complexes and higher-order assemblies

M Miskei, C Antal, M Fuxreiter - Nucleic acids research, 2016 - academic.oup.com
Abstract FuzDB (http://protdyn-database. org) compiles experimentally observed fuzzy
protein complexes, where intrinsic disorder (ID) is maintained upon interacting with a partner …

Fold or not to fold upon binding—does it really matter?

M Fuxreiter - Current Opinion in Structural Biology, 2019 - Elsevier
Highlights•Suboptimal binding motifs lead to frustrated energy landscape.•Non-native,
transient contacts regulate heterogeneity in transition or bound state.•Alternative recognition …