[HTML][HTML] Small-molecule binding aptamers: Selection strategies, characterization, and applications

A Ruscito, MC DeRosa - Frontiers in chemistry, 2016 - frontiersin.org
Aptamers are single-stranded, synthetic oligonucleotides that fold into 3-dimensional
shapes capable of binding non-covalently with high affinity and specificity to a target …

Synthetic riboswitches: from plug and pray toward plug and play

M Etzel, M Mörl - Biochemistry, 2017 - ACS Publications
In synthetic biology, metabolic engineering, and gene therapy, there is a strong demand for
orthogonal or externally controlled regulation of gene expression. Here, RNA-based …

Strategies for creating structure-switching aptamers

TA Feagin, N Maganzini, HT Soh - ACS sensors, 2018 - ACS Publications
Aptamer biosensor that can switch its structure upon target binding offers a powerful strategy
for molecular detection. However, the process of converting an aptamer into a “structure …

Sensitive cells: enabling tools for static and dynamic control of microbial metabolic pathways

BF Cress, EA Trantas, F Ververidis, RJ Linhardt… - Current opinion in …, 2015 - Elsevier
Highlights•Recently developed genome engineering tools facilitate pathway control.•Novel
genetic regulators enable multi-level static and dynamic control.•State-of-the-art applications …

Communicating artificial cells

R Lentini, NY Martín, SS Mansy - Current opinion in chemical biology, 2016 - Elsevier
Highlights•Artificial cells can be made to sense and respond to the environment, including
the presence of natural cells.•One significant limitation to the advancement of artificial cells …

Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch

L Cheng, EN White, NL Brandt, AM Yu… - Nucleic acids …, 2022 - academic.oup.com
RNA folds cotranscriptionally to traverse out-of-equilibrium intermediate structures that are
important for RNA function in the context of gene regulation. To investigate this process …

RNA-based dynamic genetic controllers: development strategies and applications

S Jang, S Jang, J Yang, SW Seo, GY Jung - Current opinion in …, 2018 - Elsevier
Highlights•Unique properties of RNA lead to the development of RNA-based dynamic
genetic controllers.•Natural riboswitches are re-engineered to detect new molecules.•RNA …

Future perspectives on aptamer for application in food authentication

N Mohamad, NI Azizan, NFK Mokhtar, S Mustafa… - Analytical …, 2022 - Elsevier
Food fraudulence and food contamination are major concerns, particularly among
consumers with specific dietary, cultural, lifestyle, and religious requirements. Current food …

Aptamer recognition of multiplexed small-molecule-functionalized substrates

N Nakatsuka, HH Cao, S Deshayes… - … applied materials & …, 2018 - ACS Publications
Aptamers are chemically synthesized oligonucleotides or peptides with molecular
recognition capabilities. We investigated recognition of substrate-tethered small-molecule …

[HTML][HTML] Regulation of mRNA translation by a photoriboswitch

KA Rotstan, MM Abdelsayed, LFM Passalacqua… - Elife, 2020 - elifesciences.org
Optogenetic tools have revolutionized the study of receptor-mediated processes, but such
tools are lacking for RNA-controlled systems. In particular, light-activated regulatory RNAs …