The amyloid architecture provides a scaffold for enzyme-like catalysts

ZS Al-Garawi, BA McIntosh, D Neill-Hall, AA Hatimy… - Nanoscale, 2017 - pubs.rsc.org
Natural biological enzymes possess catalytic sites that are generally surrounded by a large
three-dimensional scaffold. However, the proportion of the protein molecule that participates …

Zinc to cadmium replacement in the prokaryotic zinc-finger domain

G Malgieri, M Palmieri, S Esposito, V Maione… - Metallomics, 2014 - academic.oup.com
Given the similar chemical properties of zinc and cadmium, zinc finger domains have been
often proposed as mediators of the toxic and carcinogenic effects exerted by this xenobiotic …

Structural Zn (II) implies a switch from fully cooperative to partly downhill folding in highly homologous proteins

M Palmieri, G Malgieri, L Russo, I Baglivo… - Journal of the …, 2013 - ACS Publications
In the funneled landscape, proteins fold to their native states through a stochastic process in
which the free energy decreases spontaneously and unfolded, transition, native, and …

A new quantum calibrated force field for zinc–protein complex

T Zhu, X Xiao, C Ji, JZH Zhang - Journal of chemical theory and …, 2013 - ACS Publications
A quantum calibrated polarizable-charge transfer force field (QPCT) has been proposed to
accurately describe the interaction dynamics of zinc–protein complexes. The parameters of …

Ni (II), Hg (II), and Pb (II) coordination in the prokaryotic zinc-finger Ros87

V Sivo, G D'Abrosca, I Baglivo, R Iacovino… - Inorganic …, 2018 - ACS Publications
Zinc ion binding is a principal event in the achievement of the correct fold in classical zinc
finger domains since the motif is largely unfolded in the absence of metal. In the case of a …

Understanding the molecular mechanism of pathogenic variants of BIR2 domain in XIAP-deficient inflammatory bowel disease

J Lee, KM Sim, M Kang, HJ Oh, HJ Choi, YE Kim… - Scientific Reports, 2024 - nature.com
X-linked inhibitor of apoptosis protein (XIAP) deficiency causes refractory inflammatory
bowel disease. The XIAP protein plays a pivotal role in the pro-inflammatory response …

Nuclear localization signal region in nuclear receptor PXR governs the receptor association with mitotic chromatin

M Rana, AK Dash, K Ponnusamy, RK Tyagi - Chromosome research, 2018 - Springer
In recent years, some transcription factors have been observed to remain associated with
mitotic chromatin. Based on these observations, it is suggested that these chromatin-bound …

Resolving the zinc binding capacity of honey bee vitellogenin and locating its putative binding sites

V Leipart, Ø Enger, DC Turcu… - Insect Molecular …, 2022 - Wiley Online Library
The protein vitellogenin (Vg) plays a central role in lipid transportation in most egg‐laying
animals. High Vg levels correlate with stress resistance and lifespan potential in honey bees …

The zinc finger motif in the mitochondrial large ribosomal subunit protein bL36m is essential for optimal yeast mitoribosome assembly and function

H Zhong, A Barrientos - Biochimica et Biophysica Acta (BBA)-Molecular …, 2024 - Elsevier
Ribosomes across species contain subsets of zinc finger proteins that play structural roles
by binding to rRNA. While the majority of these zinc fingers belong to the C2-C2 type, the …

Engineering and Design of Programmable Genome Editors

S Talluri - The Journal of Physical Chemistry B, 2022 - ACS Publications
Programmable genome editors are enzymes that can be targeted to a specific location in the
genome for making site-specific alterations or deletions. The engineering, design, and …