Machine learning in plant science and plant breeding

ADJ van Dijk, G Kootstra, W Kruijer, D de Ridder - Iscience, 2021 - cell.com
Technological developments have revolutionized measurements on plant genotypes and
phenotypes, leading to routine production of large, complex data sets. This has led to …

Genomic selection: A tool for accelerating the efficiency of molecular breeding for development of climate-resilient crops

N Budhlakoti, AK Kushwaha, A Rai… - Frontiers in …, 2022 - frontiersin.org
Since the inception of the theory and conceptual framework of genomic selection (GS),
extensive research has been done on evaluating its efficiency for utilization in crop …

Artificial intelligence in plant breeding

MA Farooq, S Gao, MA Hassan, Z Huang, A Rasheed… - Trends in Genetics, 2024 - cell.com
Harnessing cutting-edge technologies to enhance crop productivity is a pivotal goal in
modern plant breeding. Artificial intelligence (AI) is renowned for its prowess in big data …

Whole-genome regression and prediction methods applied to plant and animal breeding

G de Los Campos, JM Hickey, R Pong-Wong… - Genetics, 2013 - academic.oup.com
Genomic-enabled prediction is becoming increasingly important in animal and plant
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …

[HTML][HTML] Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data

H Tong, Z Nikoloski - Journal of plant physiology, 2021 - Elsevier
Highly efficient and accurate selection of elite genotypes can lead to dramatic shortening of
the breeding cycle in major crops relevant for sustaining present demands for food, feed …

Predicting complex quantitative traits with Bayesian neural networks: a case study with Jersey cows and wheat

D Gianola, H Okut, KA Weigel, GJM Rosa - BMC genetics, 2011 - Springer
Background In the study of associations between genomic data and complex phenotypes
there may be relationships that are not amenable to parametric statistical modeling. Such …

Benchmarking parametric and machine learning models for genomic prediction of complex traits

CB Azodi, E Bolger, A McCarren… - G3: Genes …, 2019 - academic.oup.com
The usefulness of genomic prediction in crop and livestock breeding programs has
prompted efforts to develop new and improved genomic prediction algorithms, such as …

Parametric and nonparametric statistical methods for genomic selection of traits with additive and epistatic genetic architectures

R Howard, AL Carriquiry… - G3: Genes, Genomes …, 2014 - academic.oup.com
Parametric and nonparametric methods have been developed for purposes of predicting
phenotypes. These methods are based on retrospective analyses of empirical data …

Kernel-based whole-genome prediction of complex traits: a review

G Morota, D Gianola - Frontiers in genetics, 2014 - frontiersin.org
Prediction of genetic values has been a focus of applied quantitative genetics since the
beginning of the 20th century, with renewed interest following the advent of the era of whole …

Machine learning methods and predictive ability metrics for genome-wide prediction of complex traits

O González-Recio, GJM Rosa, D Gianola - Livestock Science, 2014 - Elsevier
Genome-wide prediction of complex traits has become increasingly important in animal and
plant breeding, and is receiving increasing attention in human genetics. Most common …