[HTML][HTML] Shared gut, but distinct oral microbiota composition in primary Sjögren's syndrome and systemic lupus erythematosus

TA van der Meulen, HJM Harmsen, AV Vila… - Journal of …, 2019 - Elsevier
Objective Alterations in the microbiota composition of the gastro-intestinal tract are
suspected to be involved in the etiopathogenesis of two closely related systemic …

Pharmacomicrobiomics of Classical Immunosuppressant Drugs: A Systematic Review

A Manes, T Di Renzo, L Dodani, A Reale, C Gautiero… - Biomedicines, 2023 - mdpi.com
The clinical response to classical immunosuppressant drugs (cIMDs) is highly variable
among individuals. We performed a systematic review of published evidence supporting the …

'NetShift': a methodology for understanding 'driver microbes' from healthy and disease microbiome datasets

BK Kuntal, P Chandrakar, S Sadhu… - The ISME journal, 2019 - academic.oup.com
The combined effect of mutual association within the co-inhabiting microbes in human body
is known to play a major role in determining health status of individuals. The differential …

New studies of pathogenesis of rheumatoid arthritis with collagen‐induced and collagen antibody‐induced arthritis models: new insight involving bacteria flora

R Hashida, Y Shimozuru, J Chang… - Autoimmune …, 2021 - Wiley Online Library
Much public research suggests that autoimmune diseases such as rheumatoid arthritis (RA)
are induced by aberrant “self” immune responses attacking autologous tissues and organ …

Statistical analysis of co-occurrence patterns in microbial presence-absence datasets

KP Mainali, S Bewick, P Thielen, T Mehoke… - PLoS …, 2017 - journals.plos.org
Drawing on a long history in macroecology, correlation analysis of microbiome datasets is
becoming a common practice for identifying relationships or shared ecological niches …

Host-microbiome synergistic control on sphingolipid metabolism by mechanotransduction in model arthritis

X Zhou, V Devescovi, Y Liu, JE Dent, C Nardini - Biomolecules, 2019 - mdpi.com
Chronic inflammatory autoimmune disorders are systemic diseases with increasing
incidence and still lack a cure. More recently, attention has been placed in understanding …

Dissection of the module network implementation “LemonTree”: enhancements towards applications in metagenomics and translation in autoimmune maladies

Y Lu, X Zhou, C Nardini - Molecular BioSystems, 2017 - pubs.rsc.org
Under the current deluge of omics, module networks distinctively emerge as methods
capable of not only identifying inherently coherent groups (modules), thus reducing …