Long-term effects of mineral fertilizers on soil microorganisms–A review

D Geisseler, KM Scow - Soil Biology and Biochemistry, 2014 - Elsevier
Increasing nutrient inputs into terrestrial ecosystems affect not only plant communities but
also associated soil microbial communities. Studies carried out in predominantly …

[HTML][HTML] Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

JI Prosser, GW Nicol - Trends in microbiology, 2012 - cell.com
Autotrophic archaeal and bacterial ammonia-oxidisers (AOA and AOB) drive soil nitrification.
Ammonia limitation, mixotrophy, and pH have been suggested as factors providing niche …

Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities

MY Jung, CJ Sedlacek, KD Kits, AJ Mueller… - The ISME …, 2022 - academic.oup.com
Nitrification, the oxidation of ammonia to nitrate, is an essential process in the
biogeochemical nitrogen cycle. The first step of nitrification, ammonia oxidation, is performed …

The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions

L Hink, C Gubry-Rangin, GW Nicol… - The ISME journal, 2018 - academic.oup.com
High and low rates of ammonium supply are believed to favour ammonia-oxidising bacteria
(AOB) and archaea (AOA), respectively. Although their contrasting affinities for ammonium …

Enrichment and physiological characterization of a novel comammox Nitrospira indicates ammonium inhibition of complete nitrification

D Sakoula, H Koch, J Frank, MSM Jetten… - The ISME …, 2021 - academic.oup.com
The recent discovery of bacteria within the genus Nitrospira capable of complete ammonia
oxidation (comammox) demonstrated that the sequential oxidation of ammonia to nitrate via …

[HTML][HTML] The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

M Pester, C Schleper, M Wagner - Current opinion in microbiology, 2011 - Elsevier
Thaumarchaeota range among the most abundant archaea on Earth. Initially classified as
'mesophilic Crenarchaeota', comparative genomics has recently revealed that they form a …

Ammonia-oxidizing bacteria are more responsive than archaea to nitrogen source in an agricultural soil

Y Ouyang, JM Norton, JM Stark, JR Reeve… - Soil Biology and …, 2016 - Elsevier
In the majority of agricultural soils, ammonium (NH 4+) is rapidly converted to nitrate (NO 3−)
in the biological ammonia and nitrite oxidation processes known as nitrification. The often …

Organic fertilizer reduced carbon and nitrogen in runoff and buffered soil acidification in tea plantations: Evidence in nutrient contents and isotope fractionations

S Xie, F Yang, H Feng, Z Yu, C Liu, C Wei… - Science of the total …, 2021 - Elsevier
Carbon (C) and nitrogen (N) inputs to farmland via fertilizer application are potential sources
of C and N that influence soil acidification and water eutrophication. A pilot study was …

Isolation of 'Candidatus Nitrosocosmicus franklandus', a novel ureolytic soil archaeal ammonia oxidiser with tolerance to high ammonia concentration

LE Lehtovirta-Morley, J Ross, L Hink… - FEMS Microbiology …, 2016 - academic.oup.com
Studies of the distribution of ammonia oxidising archaea (AOA) and bacteria (AOB) suggest
distinct ecological niches characterised by ammonia concentration and pH, arising through …

Ammonium availability and temperature control contributions of ammonia oxidizing bacteria and archaea to nitrification in an agricultural soil

Y Ouyang, JM Norton, JM Stark - Soil Biology and Biochemistry, 2017 - Elsevier
Soil ammonia-oxidizing bacteria and archaea (AOB and AOA) convert ammonium/ammonia
to nitrite in the process of nitrification. However, the potentially differential responses of these …