Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance

AM Piper, J Batovska, NOI Cogan, J Weiss… - …, 2019 - academic.oup.com
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …

Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

R Lücking, MC Aime, B Robbertse, AN Miller… - IMA fungus, 2020 - Springer
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …

Microbiome changes during tuberculosis and antituberculous therapy

BY Hong, NP Maulén, AJ Adami… - Clinical microbiology …, 2016 - Am Soc Microbiol
The critical role of commensal microbiota in the human body has been increasingly
recognized, and our understanding of its implications in human health and disease has …

MetaEuk—sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics

E Levy Karin, M Mirdita, J Söding - Microbiome, 2020 - Springer
Background Metagenomics is revolutionizing the study of microorganisms and their
involvement in biological, biomedical, and geochemical processes, allowing us to …

Increased yield and CO2 sequestration potential with the C4 cereal Sorghum bicolor cultivated in basaltic rock dust‐amended agricultural soil

ME Kelland, PW Wade, AL Lewis… - Global Change …, 2020 - Wiley Online Library
Land‐based enhanced rock weathering (ERW) is a biogeochemical carbon dioxide removal
(CDR) strategy aiming to accelerate natural geological processes of carbon sequestration …

Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing

M Tessler, JS Neumann, E Afshinnekoo, M Pineda… - Scientific reports, 2017 - nature.com
Modern metagenomic environmental DNA studies are almost completely reliant on next-
generation sequencing, making evaluations of these methods critical. We compare two next …

Unraveling the fecal microbiota and metagenomic functional capacity associated with feed efficiency in pigs

H Yang, X Huang, S Fang, M He, Y Zhao… - Frontiers in …, 2017 - frontiersin.org
Gut microbiota plays fundamental roles in energy harvest, nutrient digestion, and intestinal
health, especially in processing indigestible components of polysaccharides in diet …

Uncovering the composition of microbial community structure and metagenomics among three gut locations in pigs with distinct fatness

H Yang, X Huang, S Fang, W Xin, L Huang, C Chen - Scientific reports, 2016 - nature.com
Uncovering the phylogenetic composition of microbial community and the potential
functional capacity of microbiome in different gut locations is of great importance to pig …

PipeCraft: Flexible open‐source toolkit for bioinformatics analysis of custom high‐throughput amplicon sequencing data

S Anslan, M Bahram, I Hiiesalu… - Molecular ecology …, 2017 - Wiley Online Library
High‐throughput sequencing methods have become a routine analysis tool in
environmental sciences as well as in public and private sector. These methods provide vast …

Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of the 18S rRNA gene with a focus on photosynthetic groups and especially …

M Tragin, A Zingone, D Vaulot - Environmental Microbiology, 2018 - Wiley Online Library
We compared the composition of eukaryotic communities using two genetic markers (18S
rRNA V4 and V9 regions) at 27 sites sampled during Ocean Sampling Day 2014, with a …