Transcription factor dynamics: one molecule at a time

K Wagh, DA Stavreva, A Upadhyaya… - Annual Review of Cell …, 2023 - annualreviews.org
Cells must tightly regulate their gene expression programs and yet rapidly respond to acute
biochemical and biophysical cues within their environment. This information is transmitted to …

Transcription dynamics

GL Hager, JG McNally, T Misteli - Molecular cell, 2009 - cell.com
All aspects of transcription and its regulation involve dynamic events. The basal transcription
machinery and regulatory components are dynamically recruited to their target genes, and …

A benchmark for chromatin binding measurements in live cells

D Mazza, A Abernathy, N Golob, T Morisaki… - Nucleic acids …, 2012 - academic.oup.com
Live-cell measurement of protein binding to chromatin allows probing cellular biochemistry
in physiological conditions, which are difficult to mimic in vitro. However, different studies …

A single-molecule characterization of p53 search on DNA

A Tafvizi, F Huang, AR Fersht… - Proceedings of the …, 2011 - National Acad Sciences
The tumor suppressor p53 slides along DNA while searching for its cognate site. Central to
this process is the basic C-terminal domain, whose regulatory role and its coordination with …

[图书][B] Dynamics of cancer: mathematical foundations of oncology

D Wodarz, N Komarova - 2014 - books.google.com
The book aims to provide an introduction to mathematical models that describe the
dynamics of tumor growth and the evolution of tumor cells. It can be used as a textbook for …

Nucleosome-binding affinity as a primary determinant of the nuclear mobility of the pioneer transcription factor FoxA

T Sekiya, UM Muthurajan, K Luger… - Genes & …, 2009 - genesdev.cshlp.org
FoxA proteins are pioneer transcription factors, among the first to bind chromatin domains in
development and enable gene activity. The Fox DNA-binding domain structurally resembles …

FRAP and kinetic modeling in the analysis of nuclear protein dynamics: what do we really know?

F Mueller, D Mazza, TJ Stasevich… - Current opinion in cell …, 2010 - Elsevier
The binding of nuclear proteins to chromatin in live cells has been analyzed by kinetic
modeling procedures applied to experimental data from fluorescence recovery after …

Fluorescence recovery after photobleaching in material and life sciences: putting theory into practice

N Lorén, J Hagman, JK Jonasson… - Quarterly reviews of …, 2015 - cambridge.org
Fluorescence recovery after photobleaching (FRAP) is a versatile tool for determining
diffusion and interaction/binding properties in biological and material sciences. An …

Live-cell p53 single-molecule binding is modulated by C-terminal acetylation and correlates with transcriptional activity

A Loffreda, E Jacchetti, S Antunes, P Rainone… - Nature …, 2017 - nature.com
Live-cell microscopy has highlighted that transcription factors bind transiently to chromatin
but it is not clear if the duration of these binding interactions can be modulated in response …

Evidence for a common mode of transcription factor interaction with chromatin as revealed by improved quantitative fluorescence recovery after photobleaching

F Mueller, P Wach, JG McNally - Biophysical journal, 2008 - cell.com
How site-specific transcription factors scan the genome to locate their target sites is a
fundamental question in gene regulation. The in vivo binding interactions of several different …