Allostery in its many disguises: from theory to applications

SJ Wodak, E Paci, NV Dokholyan, IN Berezovsky… - Structure, 2019 - cell.com
Allosteric regulation plays an important role in many biological processes, such as signal
transduction, transcriptional regulation, and metabolism. Allostery is rooted in the …

Infrared difference spectroscopy of proteins: from bands to bonds

VA Lorenz-Fonfria - Chemical reviews, 2020 - ACS Publications
Infrared difference spectroscopy probes vibrational changes of proteins upon their
perturbation. Compared with other spectroscopic methods, it stands out by its sensitivity to …

Water is an active matrix of life for cell and molecular biology

P Ball - Proceedings of the National Academy of Sciences, 2017 - National Acad Sciences
Szent-Győrgi called water the “matrix of life” and claimed that there was no life without it.
This statement is true, as far as we know, on our planet, but it is not clear whether it must …

Azobenzene photocontrol of peptides and proteins

RJ Mart, RK Allemann - Chemical Communications, 2016 - pubs.rsc.org
The last few years have witnessed significant advances in the use of light as a stimulus to
control biomolecular interactions. Great efforts have been devoted to the development of …

Single-molecule FRET methods to study the dynamics of proteins at work

H Mazal, G Haran - Current opinion in biomedical engineering, 2019 - Elsevier
Feynman commented that “Everything that living things do can be understood in terms of the
jiggling and wiggling of atoms”. Proteins can jiggle and wiggle large structural elements …

Controlling allosteric networks in proteins

NV Dokholyan - Chemical reviews, 2016 - ACS Publications
Allosteric transition, defined as conformational changes induced by ligand binding, is one of
the fundamental properties of proteins. Allostery has been observed and characterized in …

Azobenzene-based small molecular photoswitches for protein modulation

M Zhu, H Zhou - Organic & biomolecular chemistry, 2018 - pubs.rsc.org
Molecular photoswitches are a class of chemical structures that can readily isomerize
between distinct geometries upon irradiation with light. Molecular photoswitches are utilized …

Symmetry, rigidity, and allosteric signaling: from monomeric proteins to molecular machines

D Thirumalai, C Hyeon, PI Zhuravlev… - Chemical …, 2019 - ACS Publications
Allosteric signaling in biological molecules, which may be viewed as specific action at a
distance due to localized perturbation upon binding of ligands or changes in environmental …

Using azobenzene photocontrol to set proteins in motion

O Bozovic, B Jankovic, P Hamm - Nature Reviews Chemistry, 2022 - nature.com
Controlling the activity of proteins with azobenzene photoswitches is a potent tool for
manipulating their biological function. With the help of light, it is possible to change binding …

Computational amide I 2D IR spectroscopy as a probe of protein structure and dynamics

M Reppert, A Tokmakoff - Annual Review of Physical Chemistry, 2016 - annualreviews.org
Two-dimensional infrared spectroscopy of amide I vibrations is increasingly being used to
study the structure and dynamics of proteins and peptides. Amide I, a primarily carbonyl …