Modeling the kinetics of bimolecular reactions

A Fernández-Ramos, JA Miller, SJ Klippenstein… - Chemical …, 2006 - ACS Publications
This review is concerned with the theoretical and computational modeling of bimolecular
reactions, especially with generally applicable methods for kinetics (ie, overall rates as …

QM/MM methods for biological systems

HM Senn, W Thiel - Atomistic approaches in modern biology: from …, 2007 - Springer
Thirty years after the seminal contribution by Warshel and Levitt, we review the state of the
art of combined quantum-mechanics/molecular-mechanics (QM/MM) methods, with a focus …

Reassessing the atmospheric oxidation mechanism of toluene

Y Ji, J Zhao, H Terazono, K Misawa… - Proceedings of the …, 2017 - National Acad Sciences
Photochemical oxidation of aromatic hydrocarbons leads to tropospheric ozone and
secondary organic aerosol (SOA) formation, with profound implications for air quality, human …

The SCC-DFTB method and its application to biological systems

M Elstner - Theoretical Chemistry Accounts, 2006 - Springer
The Self-consistent charge density functional tight-binding (SCC-DFTB) is an approximate
quantum chemical method derived from density functional theory (DFT) based on a second …

Thermal rearrangements of vinylcyclopropanes to cyclopentenes

JE Baldwin - Chemical reviews, 2003 - ACS Publications
Vinylcyclopropane was introduced to the chemical world through Gustavson's reported
synthesis of the hydrocarbon late in the 19th century. 1 The preparation from C (CH2Br) 4 …

Variational transition state theory with multidimensional tunneling

A Fernandez-Ramos, BA Ellingson… - Reviews in …, 2007 - Wiley Online Library
This review describes the application of variational transition state theory (VTST) to the
calculation of chemical reaction rates. In 1985, two of us, together with Alan D. Isaacson …

Quantum Tunneling Instability in Pericyclic Reactions

A Frenklach, H Amlani, S Kozuch - Journal of the American …, 2024 - ACS Publications
Several cycloreversion reactions of the retro-Diels–Alder type were computationally
assessed to understand their quantum tunneling (QT) reactivity. N2, CO, and other leaving …

Hydrogen abstraction acetylene addition and Diels− Alder mechanisms of PAH formation: a detailed study using first principles calculations

VV Kislov, NI Islamova, AM Kolker, SH Lin… - Journal of chemical …, 2005 - ACS Publications
Extensive ab initio Gaussian-3-type calculations of potential energy surfaces (PES), which
are expected to be accurate within 1− 2 kcal/mol, combined with statistical theory …

Canonical variational theory for enzyme kinetics with the protein mean force and multidimensional quantum mechanical tunneling dynamics. Theory and application to …

C Alhambra, J Corchado, ML Sánchez… - The Journal of …, 2001 - ACS Publications
We present a theoretical framework for the calculation of rate constants of enzyme-catalyzed
reactions that combines variational optimization of the dynamical bottleneck for overbarrier …

Quantum tunneling instability of the mythical hexazine and pentazine

I Sedgi, S Kozuch - Chemical Communications, 2024 - pubs.rsc.org
Through computational analysis we found that pentazine and hexazine, two hypothetical
high-energy density materials, exhibit inherent instability due to quantum tunneling effects …