Stochastic models of intracellular transport

PC Bressloff, JM Newby - Reviews of Modern Physics, 2013 - APS
The interior of a living cell is a crowded, heterogenuous, fluctuating environment. Hence, a
major challenge in modeling intracellular transport is to analyze stochastic processes within …

Nonequilibrium steady states of matrix-product form: a solver's guide

RA Blythe, MR Evans - Journal of Physics A: Mathematical and …, 2007 - iopscience.iop.org
We consider the general problem of determining the steady state of stochastic
nonequilibrium systems such as those that have been used to model (among other things) …

[图书][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

Stochastic mechano-chemical kinetics of molecular motors: a multidisciplinary enterprise from a physicist's perspective

D Chowdhury - Physics Reports, 2013 - Elsevier
A molecular motor is made of either a single macromolecule or a macromolecular complex.
Just like their macroscopic counterparts, molecular motors “transduce” input energy into …

Physics of transport and traffic phenomena in biology: from molecular motors and cells to organisms

D Chowdhury, A Schadschneider, K Nishinari - Physics of Life reviews, 2005 - Elsevier
Traffic-like collective movements are observed at almost all levels of biological systems.
Molecular motor proteins like, for example, kinesin and dynein, which are the vehicles of …

Totally asymmetric simple exclusion process with Langmuir kinetics

A Parmeggiani, T Franosch, E Frey - … Review E—Statistical, Nonlinear, and Soft …, 2004 - APS
We discuss a class of driven lattice gas obtained by coupling the one-dimensional totally
asymmetric simple exclusion process to Langmuir kinetics. In the limit where these dynamics …

Intracellular transport of single-headed molecular motors KIF1A

K Nishinari, Y Okada, A Schadschneider… - Physical review …, 2005 - APS
Motivated by experiments on single-headed kinesin KIF1A, we develop a model of
intracellular transport by interacting molecular motors. It captures explicitly not only the …

Critical phenomena and universal dynamics in one-dimensional driven diffusive systems with two species of particles

GM Schütz - Journal of Physics A: Mathematical and General, 2003 - iopscience.iop.org
Recent work on stochastic interacting particle systems with two particle species (or single-
species systems with kinematic constraints) has demonstrated the existence of spontaneous …

Two-channel totally asymmetric simple exclusion processes

E Pronina, AB Kolomeisky - Journal of Physics A: Mathematical …, 2004 - iopscience.iop.org
Totally asymmetric simple exclusion processes, consisting of two coupled parallel lattice
chains with particles interacting with hard-core exclusion and moving along the channels …

Interacting RNA polymerase motors on a DNA track: Effects of traffic congestion and intrinsic noise on RNA synthesis

T Tripathi, D Chowdhury - Physical Review E—Statistical, Nonlinear, and Soft …, 2008 - APS
RNA polymerase (RNAP) is an enzyme that synthesizes a messenger RNA (mRNA) strand
which is complementary to a single-stranded DNA template. From the perspective of …