Genetic variants in microRNA genes: impact on microRNA expression, function, and disease

S Cammaerts, M Strazisar, P De Rijk… - Frontiers in genetics, 2015 - frontiersin.org
MicroRNAs (miRNAs) are important regulators of gene expression and like any other gene,
their coding sequences are subject to genetic variation. Variants in miRNA genes can have …

[HTML][HTML] Genomic variations in non-coding RNAs: structure, function and regulation

D Bhartiya, V Scaria - Genomics, 2016 - Elsevier
The last decade has seen tremendous improvements in the understanding of human
variations and their association with human traits and diseases. The availability of high …

Cascleave: towards more accurate prediction of caspase substrate cleavage sites

J Song, H Tan, H Shen, K Mahmood, SE Boyd… - …, 2010 - academic.oup.com
Motivation: The caspase family of cysteine proteases play essential roles in key biological
processes such as programmed cell death, differentiation, proliferation, necrosis and …

Chemically Cross-Linked Hammerhead Ribozyme as an Efficient RNA Interference Tool

LL Wang, CQ Wu, QL Zhang, Y Wang… - Journal of the …, 2024 - ACS Publications
RNA-cleaving ribozymes are promising candidates as general tools of RNA interference
(RNAi) in gene manipulation. However, compared with other RNA systems, such as siRNA …

Off-target effect of doublecortin family shRNA on neuronal migration associated with endogenous microRNA dysregulation

ST Baek, G Kerjan, SL Bielas, JE Lee… - Neuron, 2014 - cell.com
Acute gene inactivation using short hairpin RNA (shRNA, knockdown) in developing brain is
a powerful technique to study genetic function; however, discrepancies between knockdown …

[HTML][HTML] Dual-strand tumor-suppressor microRNA-145 (miR-145-5p and miR-145-3p) coordinately targeted MTDH in lung squamous cell carcinoma

H Mataki, N Seki, K Mizuno, N Nohata, K Kamikawaji… - Oncotarget, 2016 - ncbi.nlm.nih.gov
Patients with lung adenocarcinoma may benefit from recently developed molecular targeted
therapies. However, analogous advanced treatments are not available for patients with lung …

pssRNAit: A Web Server for Designing Effective and Specific Plant siRNAs with Genome-Wide Off-Target Assessment

F Ahmed, M Senthil-Kumar, X Dai, VS Ramu… - Plant …, 2020 - academic.oup.com
We report an advanced web server, the plant-specific small noncoding RNA interference
tool pssRNAit, which can be used to design a pool of small interfering RNAs (siRNAs) for …

Drosha promotes splicing of a pre-microRNA-like alternative exon

MA Havens, AA Reich, ML Hastings - PLoS genetics, 2014 - journals.plos.org
The ribonuclease III enzyme Drosha has a central role in the biogenesis of microRNA
(miRNA) by binding and cleaving hairpin structures in primary RNA transcripts into precursor …

Identification of NAD interacting residues in proteins

HR Ansari, GPS Raghava - BMC bioinformatics, 2010 - Springer
Background Small molecular cofactors or ligands play a crucial role in the proper functioning
of cells. Accurate annotation of their target proteins and binding sites is required for the …

Investigating the pathogenic SNPs in BLM helicase and their biological consequences by computational approach

FA Alzahrani, F Ahmed, M Sharma, M Rehan… - Scientific Reports, 2020 - nature.com
The BLM helicase protein plays a vital role in DNA replication and the maintenance of
genomic integrity. Variation in the BLM helicase gene resulted in defects in the DNA repair …