HeteroPP: A directive‐based heterogeneous cooperative parallel programming framework

L Wan, X Cui, Y Li, W Zheng… - … and Computation: Practice …, 2024 - Wiley Online Library
Heterogeneous platforms composed of multiple different types of computing devices (such
as CPUs, GPUs, and Intel MICs) have been widely used recently. However, most of parallel …

A scalable parallel algorithm for global sequence alignment with customizable scoring scheme

MU Sadiq, MM Yousaf - Concurrency and Computation …, 2023 - Wiley Online Library
Sequence alignment is a critical computational problem in various domains, including
genomics, proteomics, and natural language processing. The Needleman‐Wunsch (NW) …

Accelerating Smith-Waterman algorithm for faster sequence alignment using graphical processing unit

K Kaur, S Chakraborty, MK Gupta - Journal of Physics …, 2022 - iopscience.iop.org
In bioinformatics, sequence alignment is very important task to compare and find similarity
between biological sequences. Smith Waterman algorithm is most widely used for alignment …

Expeditious Covid-19 similarity measure tool based on consolidated SCA algorithm with mutation and opposition operators

M Issa - Applied Soft Computing, 2021 - Elsevier
COVID-19 is a global pandemic that aroused the interest of scientists to prevent it and
design a drug for it. Nowadays, presenting intelligent biological data analysis tools at a low …

Optimal data distribution for big-data all-to-all comparison using finite projective and affine planes

JL Hall, W Kelly, YC Tian - arXiv preprint arXiv:2308.15000, 2023 - arxiv.org
An All-to-All Comparison problem is where every element of a data set is compared with
every other element. This is analogous to projective planes and affine planes where every …

Secure itemset hiding in smart city sensor data

G Srivastava, JCW Lin, G Lin - Cluster Computing, 2024 - Springer
Sensor data that is often collected in the Internet of Things (IoT) or any smart city
environment should be protected against security and privacy concerns. Often, sensor data …

Apache Spark-based scalable feature extraction approaches for protein sequence and their clustering performance analysis

P Jha, A Tiwari, N Bharill, M Ratnaparkhe… - International Journal of …, 2023 - Springer
Genome sequencing projects are rapidly contributing to the rise of high-dimensional protein
sequence datasets. Extracting features from a high-dimensional protein sequence dataset …

CUK-Band: A CUDA-Based Multiple Genomic Sequence Alignment on GPU

X Kong, C Shen, J Tang - International Conference on Intelligent …, 2024 - Springer
Abstract Multiple Sequence Alignment (MSA) is a fundamental process that involves
aligning a set of sequences based on their identical form and structure through dynamic …

CUDAQuat: new parallel framework for fast computation of quaternion moments for color images applications

KM Hosny, MM Darwish, A Salah, K Li, AM Abdelatif - Cluster Computing, 2021 - Springer
Quaternion moments are widely used in several applications, such as image classification,
object recognition, and multimedia security. The computation of these moments requires a …

A novel scalable apache spark based feature extraction approaches for huge protein sequence and their clustering performance analysis

P Jha, A Tiwari, N Bharill, M Ratnaparkhe… - arXiv preprint arXiv …, 2022 - arxiv.org
Genome sequencing projects are rapidly increasing the number of high-dimensional protein
sequence datasets. Clustering a high-dimensional protein sequence dataset using …