Emerging roles of tRNA-derived fragments in cancer

M Fu, J Gu, M Wang, J Zhang, Y Chen, P Jiang, T Zhu… - Molecular cancer, 2023 - Springer
Abstract tRNA-derived fragments (tRFs) are an emerging category of small non-coding
RNAs that are generated from cleavage of mature tRNAs or tRNA precursors. The advance …

On the expanding roles of tRNA fragments in modulating cell behavior

R Magee, I Rigoutsos - Nucleic acids research, 2020 - academic.oup.com
The fragments that derive from transfer RNAs (tRNAs) are an emerging category of
regulatory RNAs. Known as tRFs, these fragments were reported for the first time only a …

MODOMICS: a database of RNA modification pathways. 2017 update

P Boccaletto, MA Machnicka, E Purta… - Nucleic acids …, 2018 - academic.oup.com
MODOMICS is a database of RNA modifications that provides comprehensive information
concerning the chemical structures of modified ribonucleosides, their biosynthetic pathways …

Small RNA sequencing across diverse biofluids identifies optimal methods for exRNA isolation

S Srinivasan, A Yeri, PS Cheah, A Chung, K Danielson… - Cell, 2019 - cell.com
Poor reproducibility within and across studies arising from lack of knowledge regarding the
performance of extracellular RNA (exRNA) isolation methods has hindered progress in the …

MINTbase v2. 0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projects

V Pliatsika, P Loher, R Magee, AG Telonis… - Nucleic acids …, 2018 - academic.oup.com
MINTbase is a repository that comprises nuclear and mitochondrial tRNA-derived fragments
('tRFs') found in multiple human tissues. The original version of MINTbase comprised tRFs …

A comprehensive profile of circulating RNAs in human serum

SU Umu, H Langseth, C Bucher-Johannessen… - RNA biology, 2018 - Taylor & Francis
Non-coding RNA (ncRNA) molecules have fundamental roles in cells and many are also
stable in body fluids as extracellular RNAs. In this study, we used RNA sequencing (RNA …

MINTmap: fast and exhaustive profiling of nuclear and mitochondrial tRNA fragments from short RNA-seq data

P Loher, AG Telonis, I Rigoutsos - Scientific reports, 2017 - nature.com
Transfer RNA fragments (tRFs) are an established class of constitutive regulatory molecules
that arise from precursor and mature tRNAs. RNA deep sequencing (RNA-seq) has greatly …

An ontology-based knowledge graph for representing interactions involving RNA molecules

E Cavalleri, A Cabri, M Soto-Gomez, S Bonfitto… - Scientific Data, 2024 - nature.com
The “RNA world” represents a novel frontier for the study of fundamental biological
processes and human diseases and is paving the way for the development of new drugs …

Distinct stress‐dependent signatures of cellular and extracellular tRNA‐derived small RNAs

G Li, AC Manning, A Bagi, X Yang… - Advanced …, 2022 - Wiley Online Library
The cellular response to stress is an important determinant of disease pathogenesis.
Uncovering the molecular fingerprints of distinct stress responses may identify novel …

[HTML][HTML] Biological functions and clinical significance of tRNA-derived small fragment (tsRNA) in tumors: Current state and future perspectives

Q Chen, D Li, L Jiang, Y Wu, H Yuan, G Shi, F Liu… - Cancer Letters, 2024 - Elsevier
A new class of noncoding RNAs, tsRNAs are not only abundant in humans but also have
high tissue specificity. Recently, an increasing number of studies have explored the …