Systems biology and gene networks in neurodevelopmental and neurodegenerative disorders

NN Parikshak, MJ Gandal, DH Geschwind - Nature Reviews Genetics, 2015 - nature.com
Genetic and genomic approaches have implicated hundreds of genetic loci in
neurodevelopmental disorders and neurodegeneration, but mechanistic understanding …

Leveraging big data analytics in healthcare enhancement: trends, challenges and opportunities

A Rehman, S Naz, I Razzak - Multimedia Systems, 2022 - Springer
Clinical decisions are more promising and evidence-based, hence, big data analytics to
assist clinical decision-making has been expressed for a variety of clinical fields. Due to the …

A gut-derived metabolite alters brain activity and anxiety behaviour in mice

BD Needham, M Funabashi, MD Adame, Z Wang… - Nature, 2022 - nature.com
Integration of sensory and molecular inputs from the environment shapes animal behaviour.
A major site of exposure to environmental molecules is the gastrointestinal tract, in which …

Sex differences in brain protein expression and disease

AP Wingo, Y Liu, ES Gerasimov, SM Vattathil, J Liu… - Nature medicine, 2023 - nature.com
Most complex human traits differ by sex, but we have limited insight into the underlying
mechanisms. Here, we investigated the influence of biological sex on protein expression …

Shared mechanisms across the major psychiatric and neurodegenerative diseases

TS Wingo, Y Liu, ES Gerasimov, SM Vattathil… - Nature …, 2022 - nature.com
Several common psychiatric and neurodegenerative diseases share epidemiologic risk;
however, whether they share pathophysiology is unclear and is the focus of our …

Selenium drives a transcriptional adaptive program to block ferroptosis and treat stroke

I Alim, JT Caulfield, Y Chen, V Swarup, DH Geschwind… - Cell, 2019 - cell.com
Ferroptosis, a non-apoptotic form of programmed cell death, is triggered by oxidative stress
in cancer, heat stress in plants, and hemorrhagic stroke. A homeostatic transcriptional …

PAX5-driven subtypes of B-progenitor acute lymphoblastic leukemia

Z Gu, ML Churchman, KG Roberts, I Moore, X Zhou… - Nature …, 2019 - nature.com
Recent genomic studies have identified chromosomal rearrangements defining new
subtypes of B-progenitor acute lymphoblastic leukemia (B-ALL), however many cases lack a …

Diurnal transcriptome atlas of a primate across major neural and peripheral tissues

LS Mure, HD Le, G Benegiamo, MW Chang, L Rios… - Science, 2018 - science.org
INTRODUCTION The interaction among cell-autonomous circadian oscillators—daily cycles
of activity–rest and feeding–fasting—produces diurnal rhythms in gene expression in almost …

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

MV Kuleshov, MR Jones, AD Rouillard… - Nucleic acids …, 2016 - academic.oup.com
Enrichment analysis is a popular method for analyzing gene sets generated by genome-
wide experiments. Here we present a significant update to one of the tools in this domain …

The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins

AD Rouillard, GW Gundersen, NF Fernandez… - Database, 2016 - academic.oup.com
Genomics, epigenomics, transcriptomics, proteomics and metabolomics efforts rapidly
generate a plethora of data on the activity and levels of biomolecules within mammalian …