Phosphoproteomics in the age of rapid and deep proteome profiling

NM Riley, JJ Coon - Analytical chemistry, 2016 - ACS Publications
Protein phosphorylation is a post-translational modification (PTM) that orchestrates a diverse
array of cellular processes. Because this modification serves as a rapid and reversible …

Transformative opportunities for single-cell proteomics

H Specht, N Slavov - Journal of Proteome Research, 2018 - ACS Publications
Many pressing medical challenges, such as diagnosing disease, enhancing directed stem-
cell differentiation, and classifying cancers, have long been hindered by limitations in our …

Targeting Src reactivates pyroptosis to reverse chemoresistance in lung and pancreatic cancer models

L Su, Y Chen, C Huang, S Wu, XJ Wang… - Science translational …, 2023 - science.org
Pancreatic and lung cancers frequently develop resistance to chemotherapy-induced cell
apoptosis during the treatment, indicating that targeting nonapoptotic-related pathways …

Comparison of in-solution, FASP, and S-trap based digestion methods for bottom-up proteomic studies

KR Ludwig, MM Schroll… - Journal of proteome …, 2018 - ACS Publications
Bottom-up proteomic strategies rely on efficient digestion of proteins into peptides for mass
spectrometry analysis. In-solution and filter-based strategies are commonly used for …

Third-generation electrokinetically pumped sheath-flow nanospray interface with improved stability and sensitivity for automated capillary zone electrophoresis–mass …

L Sun, G Zhu, Z Zhang, S Mou… - Journal of proteome …, 2015 - ACS Publications
We have reported a set of electrokinetically pumped sheath flow nanoelectrospray interfaces
to couple capillary zone electrophoresis with mass spectrometry. A separation capillary is …

Evaluation and optimization of reduction and alkylation methods to maximize peptide identification with MS-based proteomics

S Suttapitugsakul, H Xiao, J Smeekens, R Wu - Molecular BioSystems, 2017 - pubs.rsc.org
Mass spectrometry (MS) has become an increasingly important technique to analyze
proteins. In popular bottom-up MS-based proteomics, reduction and alkylation are routine …

Recent advances (2019–2021) of capillary electrophoresis‐mass spectrometry for multilevel proteomics

D Chen, EN McCool, Z Yang, X Shen… - Mass spectrometry …, 2023 - Wiley Online Library
Multilevel proteomics aims to delineate proteins at the peptide (bottom‐up proteomics),
proteoform (top‐down proteomics), and protein complex (native proteomics) levels. Capillary …

Capillary electrophoresis coupled to electrospray ionization tandem mass spectrometry for ultra-sensitive proteomic analysis of limited samples

KR Johnson, M Gregus, JC Kostas… - Analytical …, 2022 - ACS Publications
In this work, we developed an ultra-sensitive CE-MS/MS method for bottom-up proteomics
analysis of limited samples, down to sub-nanogram levels of total protein. Analysis of 880 …

Single-shot top-down proteomics with capillary zone electrophoresis-electrospray ionization-tandem mass spectrometry for identification of nearly 600 Escherichia coli …

RA Lubeckyj, EN McCool, X Shen, Q Kou… - Analytical …, 2017 - ACS Publications
Capillary zone electrophoresis-electrospray ionization-tandem mass spectrometry (CZE-ESI-
MS/MS) has been recognized as an invaluable platform for top-down proteomics. However …

Recent advances in CE‐MS coupling: Instrumentation, methodology, and applications

A Týčová, V Ledvina, K Klepárník - Electrophoresis, 2017 - Wiley Online Library
This review focuses on the latest development of microseparation electromigration methods
in capillaries and microfluidic devices coupled with MS for detection and identification of …