New insights into protein–protein interaction modulators in drug discovery and therapeutic advance

H Nada, Y Choi, S Kim, KS Jeong… - … and Targeted Therapy, 2024 - nature.com
Protein-protein interactions (PPIs) are fundamental to cellular signaling and transduction
which marks them as attractive therapeutic drug development targets. What were once …

Emerging therapeutic agents for colorectal cancer

M Nalli, M Puxeddu, G La Regina, S Gianni, R Silvestri - Molecules, 2021 - mdpi.com
There are promising new therapeutic agents for CRC patients, including novel small-
molecule inhibitors and immune checkpoint blockers. We focused on emerging CRC's …

Anti-cancer roles of probiotic-derived P8 protein in colorectal cancer cell line DLD-1

BC An, JY Ahn, D Kwon, SH Kwak, JY Heo… - International Journal of …, 2023 - mdpi.com
A novel probiotics-derived protein, P8, suppresses the growth of colorectal cancer (CRC).
P8 can penetrate the cell membrane via endocytosis and cause cell cycle arrest in DLD-1 …

Liquid biopsy in the setting of leptomeningeal metastases: a systematic review and meta-analysis

JH Wijaya, UD Patel, MD Quintero-Consuegra… - Journal of Neuro …, 2023 - Springer
Purpose The blood-brain barrier can prevent circulating tumor DNA (ctDNA) derived from
the central nervous system from entering the blood making it challenging to evaluate …

[HTML][HTML] Systematic investigation of machine learning on limited data: A study on predicting protein-protein binding strength

F Zheng, X Jiang, Y Wen, Y Yang, M Li - Computational and Structural …, 2024 - Elsevier
The application of machine learning techniques in biological research, especially when
dealing with limited data availability, poses significant challenges. In this study, we …

Stability and sub-cellular localization of DNA polymerase β is regulated by interactions with NQO1 and XRCC1 in response to oxidative stress

Q Fang, J Andrews, N Sharma, A Wilk… - Nucleic acids …, 2019 - academic.oup.com
Protein–protein interactions regulate many essential enzymatic processes in the cell.
Somatic mutations outside of an enzyme active site can therefore impact cellular function by …

The protein-protein interaction network of intestinal gastric cancer patients reveals hub proteins with potential prognostic value

EC Santos, R Binato, PV Fernandes… - Cancer …, 2022 - content.iospress.com
BACKGROUND: Gastric cancer (GC) is the third leading cause of cancer worldwide.
According to the Lauren classification, gastric adenocarcinoma is divided into two subtypes …

MotifAnalyzer‐PDZ: A computational program to investigate the evolution of PDZ‐binding target specificity

J Valgardson, R Cosbey, P Houser, M Rupp… - Protein …, 2019 - Wiley Online Library
Recognition of short linear motifs (SLiMs) or peptides by proteins is an important component
of many cellular processes. However, due to limited and degenerate binding motifs …

CRISPR: a journey of gene-editing based medicine

Z Golkar - Genes & Genomics, 2020 - Springer
Abstract CRISPR (Clustered Regularly Interspaced Short Palindromic Repeat) is one of the
hallmark of biological tools, contemplated as a valid and hopeful alternatives to genome …

Computational Evaluation of Peptide–Protein Binding Affinities: Application of Potential of Mean Force Calculations to SH2 Domains

P Calligari, L Stella, G Bocchinfuso - SH2 Domains: Functional Modules …, 2023 - Springer
Many biological functions are mediated by protein–protein interactions (PPIs), often
involving specific structural modules, such as SH2 domains. Inhibition of PPIs is a …