Position-effect variegation, heterochromatin formation, and gene silencing in Drosophila

SCR Elgin, G Reuter - Cold Spring Harbor perspectives …, 2013 - cshperspectives.cshlp.org
Position-effect variegation (PEV) results when a gene normally in euchromatin is juxtaposed
with heterochromatin by rearrangement or transposition. When heterochromatin packaging …

Nuclear actin filaments in DNA repair dynamics

CP Caridi, M Plessner, R Grosse, I Chiolo - Nature cell biology, 2019 - nature.com
Recent development of innovative tools for live imaging of actin filaments (F-actin) enabled
the detection of surprising nuclear structures responding to various stimuli, challenging …

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

K Berlin, S Koren, CS Chin, JP Drake… - Nature …, 2015 - nature.com
Long-read, single-molecule real-time (SMRT) sequencing is routinely used to finish
microbial genomes, but available assembly methods have not scaled well to larger …

Genetics on the Fly: A Primer on the Drosophila Model System

KG Hales, CA Korey, AM Larracuente, DM Roberts - Genetics, 2015 - academic.oup.com
Fruit flies of the genus Drosophila have been an attractive and effective genetic model
organism since Thomas Hunt Morgan and colleagues made seminal discoveries with them …

Detecting differential usage of exons from RNA-seq data

S Anders, A Reyes, W Huber - Nature Precedings, 2012 - nature.com
RNA-Seq is a powerful tool for the study of alternative splicing and other forms of alternative
isoform expression. Understanding the regulation of these processes requires sensitive and …

The Release 6 reference sequence of the Drosophila melanogaster genome

RA Hoskins, JW Carlson, KH Wan, S Park… - Genome …, 2015 - genome.cshlp.org
Drosophila melanogaster plays an important role in molecular, genetic, and genomic studies
of heredity, development, metabolism, behavior, and human disease. The initial reference …

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

G dos Santos, AJ Schroeder, JL Goodman… - Nucleic acids …, 2015 - academic.oup.com
Release 6, the latest reference genome assembly of the fruit fly Drosophila melanogaster,
was released by the Berkeley Drosophila Genome Project in 2014; it replaces their previous …

Planthopper salivary sheath protein LsSP1 contributes to manipulation of rice plant defenses

HJ Huang, YZ Wang, LL Li, HB Lu, JB Lu… - Nature …, 2023 - nature.com
Salivary elicitors secreted by herbivorous insects can be perceived by host plants to trigger
plant immunity. However, how insects secrete other salivary components to subsequently …

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

modENCODE Consortium, S Roy, J Ernst… - Science, 2010 - science.org
To gain insight into how genomic information is translated into cellular and developmental
programs, the Drosophila model organism Encyclopedia of DNA Elements (modENCODE) …

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

PV Kharchenko, AA Alekseyenko, YB Schwartz… - Nature, 2011 - nature.com
Chromatin is composed of DNA and a variety of modified histones and non-histone proteins,
which have an impact on cell differentiation, gene regulation and other key cellular …