Enhancer redundancy in development and disease

EZ Kvon, R Waymack, M Gad, Z Wunderlich - Nature Reviews Genetics, 2021 - nature.com
Shadow enhancers are seemingly redundant transcriptional cis-regulatory elements that
regulate the same gene and drive overlapping expression patterns. Recent studies have …

Topologically associating domains and regulatory landscapes in development, evolution and disease

JJ Tena, JM Santos-Pereira - Frontiers in cell and developmental …, 2021 - frontiersin.org
Animal genomes are folded in topologically associating domains (TADs) that have been
linked to the regulation of the genes they contain by constraining regulatory interactions …

[HTML][HTML] Ancient developmental genes underlie evolutionary novelties in walking fish

AL Herbert, CAH Allard, MJ McCoy, JI Wucherpfennig… - Current Biology, 2024 - cell.com
A critical question in biology is how new traits evolve, but studying this in wild animals
remains challenging. Here, we probe the genetic basis of trait gain in sea robin fish, which …

[HTML][HTML] Comprehensive in vivo interrogation reveals phenotypic impact of human enhancer variants

EZ Kvon, Y Zhu, G Kelman, CS Novak, I Plajzer-Frick… - Cell, 2020 - cell.com
Establishing causal links between non-coding variants and human phenotypes is an
increasing challenge. Here, we introduce a high-throughput mouse reporter assay for …

Galeaspid anatomy and the origin of vertebrate paired appendages

Z Gai, Q Li, HG Ferrón, JN Keating, J Wang… - Nature, 2022 - nature.com
Paired fins are a major innovation, that evolved in the jawed vertebrate lineage after
divergence from living jawless vertebrates. Extinct jawless armoured stem gnathostomes …

Early Mesozoic burst of morphological disparity in the slow-evolving coelacanth fish lineage

C Ferrante, L Cavin - Scientific Reports, 2023 - nature.com
Since the split of the coelacanth lineage from other osteichthyans 420 million years ago, the
morphological disparity of this clade has remained remarkably stable. Only few outliers with …

Housing microbial symbionts: evolutionary origins and diversification of symbiotic organs in animals

AE Douglas - … Transactions of the Royal Society B, 2020 - royalsocietypublishing.org
In many animal hosts, microbial symbionts are housed within specialized structures known
as symbiotic organs, but the evolutionary origins of these structures have rarely been …

Protein–protein interaction network module changes associated with the vertebrate fin-to-limb transition

PC Fernando, PM Mabee, E Zeng - Scientific reports, 2023 - nature.com
Evolutionary phenotypic transitions, such as the fin-to-limb transition in vertebrates, result
from modifications in related proteins and their interactions, often in response to changing …

Heterogeneity and molecular markers for CNS glial cells revealed by single-cell transcriptomics

J Sun, Y Song, Z Chen, J Qiu, S Zhu, L Wu… - Cellular and Molecular …, 2021 - Springer
Glial cells, including astrocytes, oligodendrocytes, and microglia, are the major components
in the central nervous system (CNS). Studies have revealed the heterogeneity of each glial …

Spiny and soft-rayed fin domains in acanthomorph fish are established through a BMP-gremlin-shh signaling network

R Höch, RF Schneider, A Kickuth… - Proceedings of the …, 2021 - National Acad Sciences
With over 18,000 species, the Acanthomorpha, or spiny-rayed fishes, form the largest and
arguably most diverse radiation of vertebrates. One of the key novelties that contributed to …