Scientific discovery in the age of artificial intelligence

H Wang, T Fu, Y Du, W Gao, K Huang, Z Liu… - Nature, 2023 - nature.com
Artificial intelligence (AI) is being increasingly integrated into scientific discovery to augment
and accelerate research, helping scientists to generate hypotheses, design experiments …

Diffusion models: A comprehensive survey of methods and applications

L Yang, Z Zhang, Y Song, S Hong, R Xu, Y Zhao… - ACM Computing …, 2023 - dl.acm.org
Diffusion models have emerged as a powerful new family of deep generative models with
record-breaking performance in many applications, including image synthesis, video …

[HTML][HTML] Scaling deep learning for materials discovery

A Merchant, S Batzner, SS Schoenholz, M Aykol… - Nature, 2023 - nature.com
Novel functional materials enable fundamental breakthroughs across technological
applications from clean energy to information processing,,,,,,,,,–. From microchips to batteries …

Robust deep learning–based protein sequence design using ProteinMPNN

J Dauparas, I Anishchenko, N Bennett, H Bai… - Science, 2022 - science.org
Although deep learning has revolutionized protein structure prediction, almost all
experimentally characterized de novo protein designs have been generated using …

[HTML][HTML] Illuminating protein space with a programmable generative model

JB Ingraham, M Baranov, Z Costello, KW Barber… - Nature, 2023 - nature.com
Three billion years of evolution has produced a tremendous diversity of protein molecules,
but the full potential of proteins is likely to be much greater. Accessing this potential has …

Recipe for a general, powerful, scalable graph transformer

L Rampášek, M Galkin, VP Dwivedi… - Advances in …, 2022 - proceedings.neurips.cc
We propose a recipe on how to build a general, powerful, scalable (GPS) graph Transformer
with linear complexity and state-of-the-art results on a diverse set of benchmarks. Graph …

MACE: Higher order equivariant message passing neural networks for fast and accurate force fields

I Batatia, DP Kovacs, G Simm… - Advances in Neural …, 2022 - proceedings.neurips.cc
Creating fast and accurate force fields is a long-standing challenge in computational
chemistry and materials science. Recently, Equivariant Message Passing Neural Networks …

Graphmae: Self-supervised masked graph autoencoders

Z Hou, X Liu, Y Cen, Y Dong, H Yang, C Wang… - Proceedings of the 28th …, 2022 - dl.acm.org
Self-supervised learning (SSL) has been extensively explored in recent years. Particularly,
generative SSL has seen emerging success in natural language processing and other …

A brief introduction to chemical reaction optimization

CJ Taylor, A Pomberger, KC Felton, R Grainger… - Chemical …, 2023 - ACS Publications
From the start of a synthetic chemist's training, experiments are conducted based on recipes
from textbooks and manuscripts that achieve clean reaction outcomes, allowing the scientist …

Graph representation learning in biomedicine and healthcare

MM Li, K Huang, M Zitnik - Nature Biomedical Engineering, 2022 - nature.com
Networks—or graphs—are universal descriptors of systems of interacting elements. In
biomedicine and healthcare, they can represent, for example, molecular interactions …