Variability and genetic structure of plant virus populations

F García-Arenal, A Fraile… - Annual review of …, 2001 - annualreviews.org
▪ Abstract Populations of plant viruses, like all other living beings, are genetically
heterogeneous, a property long recognized in plant virology. Only recently have the …

The neutral theory of molecular evolution: a review of recent evidence

M Kimura - The Japanese Journal of Genetics, 1991 - jstage.jst.go.jp
ABSTRA (" T In sharp contrast to the Darwinian theory of evolution by natural selection, the
neutral theory claims that the overwhelming majority of evolutionary changes at the …

Temporal signal and the phylodynamic threshold of SARS-CoV-2

S Duchene, L Featherstone… - Virus …, 2020 - academic.oup.com
The ongoing SARS-CoV-2 outbreak marks the first time that large amounts of genome
sequence data have been generated and made publicly available in near real time. Early …

Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)

A Rambaut, TT Lam, L Max Carvalho… - Virus …, 2016 - academic.oup.com
Gene sequences sampled at different points in time can be used to infer molecular
phylogenies on a natural timescale of months or years, provided that the sequences in …

HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy

JM Coffin - Science, 1995 - science.org
Several recent reports indicate that the long, clinically latent phase that characterizes human
immunodeficiency virus (HIV) infection of humans is not a period of viral inactivity, but an …

Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis

GM Jenkins, A Rambaut, OG Pybus… - Journal of molecular …, 2002 - Springer
The study of rates of nucleotide substitution in RNA viruses is central to our understanding of
their evolution. Herein we report a comprehensive analysis of substitution rates in 50 RNA …

Rapid antigenic-type replacement and DNA sequence evolution of canine parvovirus

CR Parrish, CF Aquadro, ML Strassheim… - Journal of …, 1991 - Am Soc Microbiol
Analysis of canine parvovirus (CPV) isolates with a panel of monoclonal antibodies showed
that after 1986, most viruses isolated from dogs in many parts of the United States differed …

Origin of measles virus: divergence from rinderpest virus between the 11th and 12th centuries

Y Furuse, A Suzuki, H Oshitani - Virology journal, 2010 - Springer
Measles, caused by measles virus (MeV), is a common infection in children. MeV is a
member of the genus Morbillivirus and is most closely related to rinderpest virus (RPV) …

[HTML][HTML] Neurologic complications of HIV disease and their treatment

SL Letendre, RJ Ellis, BM Ances… - Topics in HIV medicine …, 2010 - ncbi.nlm.nih.gov
Findings on the nervous system complications of HIV disease and their impact on people
living with HIV continue to accumulate. New reports at the 17 th Conference on Retroviruses …

Positive Darwinian evolution in human influenza A viruses.

WM Fitch, JM Leiter, XQ Li… - Proceedings of the …, 1991 - National Acad Sciences
We earlier suggested that type A human influenza virus genes undergo positive Darwinian
selection through immune surveillance. This requires more favorable amino acid …