[HTML][HTML] Impact of training data, ground truth and shape variability in the deep learning-based semantic segmentation of HeLa cells observed with electron microscopy

C Karabağ, MA Ortega-Ruíz, CC Reyes-Aldasoro - Journal of Imaging, 2023 - mdpi.com
This paper investigates the impact of the amount of training data and the shape variability on
the segmentation provided by the deep learning architecture U-Net. Further, the correctness …

Segmentation and modelling of the nuclear envelope of hela cells imaged with serial block face scanning electron microscopy

C Karabağ, ML Jones, CJ Peddie, AE Weston… - Journal of …, 2019 - mdpi.com
This paper describes an unsupervised algorithm, which segments the nuclear envelope of
HeLa cells imaged by Serial Block Face Scanning Electron Microscopy. The algorithm …

Segmentation And Modelling of Helanuclear Envelope

C Karabağ, ML Jones, CJ Peddie… - 2019 IEEE 16th …, 2019 - ieeexplore.ieee.org
This paper describes an algorithm to segment the 3D nuclear envelope of HeLa cancer cells
from electron microscopy images and model the volumetric shape of the nuclear envelope …

Volumetric analysis of HeLa cancer cells imaged with serial block face scanning electron microscopy

C Karabağ - 2020 - openaccess.city.ac.uk
This dissertation investigates the volumetric analysis of a variety of cervical cancer cells
called HeLa cells. HeLa cells were derived from cervical cancer cells taken from Henrietta …

[PDF][PDF] ORCID: 0000-0002-9466-2018 (2019). Segmentation and Modelling of the Nuclear Envelope of HeLa Cells Imaged with Serial Block Face Scanning Electron …

C Karabağ, ML Jones, CJ Peddie, AE Weston… - Journal of Imaging - core.ac.uk
This paper describes an unsupervised algorithm, which segments the nuclear envelope of
HeLa cells imaged by Serial Block Face Scanning Electron Microscopy. The algorithm …

[PDF][PDF] ORCID: 0000-0002-9466-2018 (2019). Segmentation and modelling of hela nuclear envelope

C Karabag, ML Jones, CJ Peddie, AE Weston… - 2019 IEEE 16th … - core.ac.uk
This paper describes an algorithm to segment the 3D nuclear envelope of HeLa cancer cells
from electron microscopy images and model the volumetric shape of the nuclear envelope …

Modelling the nuclear envelope of HeLa cells

C Karabağ, ML Jones, CJ Peddie, AE Weston… - bioRxiv, 2018 - biorxiv.org
This paper describes a framework for the automatic segmentation of the nuclear envelope of
cancerous HeLa cells and the modelling of the volumetric shape against an ellipsoid. The …