Merged magnetic resonance and light sheet microscopy of the whole mouse brain

GA Johnson, Y Tian, DG Ashbrook… - Proceedings of the …, 2023 - National Acad Sciences
We have developed workflows to align 3D magnetic resonance histology (MRH) of the
mouse brain with light sheet microscopy (LSM) and 3D delineations of the same specimen …

[HTML][HTML] Precise cerebral vascular atlas in stereotaxic coordinates of whole mouse brain

B Xiong, A Li, Y Lou, S Chen, B Long, J Peng… - Frontiers in …, 2017 - frontiersin.org
Understanding amazingly complex brain functions and pathologies requires a complete
cerebral vascular atlas in stereotaxic coordinates. Making a precise atlas for cerebral …

Staining and embedding the whole mouse brain for electron microscopy

S Mikula, J Binding, W Denk - Nature methods, 2012 - nature.com
The development of methods for imaging large contiguous volumes with the electron
microscope could allow the complete mapping of a whole mouse brain at the single-axon …

[HTML][HTML] Mapping the connectome: multi-level analysis of brain connectivity

TB Leergaard, CC Hilgetag, O Sporns - Frontiers in neuroinformatics, 2012 - frontiersin.org
Figure 1| From multi-modal connectivity data to integrated connectomes. Image panels
illustrating recent progress, selected and modified from contributions to the Research Topic …

Possum—a framework for three-dimensional reconstruction of brain images from serial sections

P Majka, DK Wójcik - Neuroinformatics, 2016 - Springer
Techniques based on imaging serial sections of brain tissue provide insight into brain
structure and function. However, to compare or combine them with results from three …

Modelling the brain: Elementary components to explain ensemble functions

E D'Angelo, CG Wheeler-Kingshott - La Rivista del Nuovo Cimento, 2017 - Springer
The brain is organized on multiple levels. The lowest meaningful one pertains to the
molecular realm, followed by subcellular structures like the synapses, by cells like the …

Image-guided, laser-based fabrication of vascular-derived microfluidic networks

KA Heintz, D Mayerich, JH Slater - JoVE (Journal of Visualized …, 2017 - jove.com
This detailed protocol outlines the implementation of image-guided, laser-based hydrogel
degradation for the fabrication of vascular-derived microfluidic networks embedded in …

Mapping the full vascular network in the mouse brain at submicrometer resolution

J Lee, W An, Y Choe - … Conference of the IEEE Engineering in …, 2017 - ieeexplore.ieee.org
Mapping the microvascular networks in the brain can lead to significant scientific and clinical
insights. We developed a serial sectioning microscopy technique called the Knife-Edge …

Knife-edge scanning microscopy for bright-field multi-cubic centimeter analysis of microvasculature

MJ Pesavento, C Miller, K Pelton, M Maloof… - Microscopy …, 2017 - academic.oup.com
Serial section microscopy has proven to be a powerful tool in examining the 3-dimensional
(3D) nature of tissue; however, it is limited by the size of tissue samples that can be used …

Conneconomics: the economics of dense, large-scale, high-resolution neural connectomics

AH Marblestone, ER Daugharthy, R Kalhor, ID Peikon… - Biorxiv, 2013 - biorxiv.org
We analyze the scaling and cost-performance characteristics of current and projected
connectomics approaches, with reference to the potential implications of recent advances in …