Using next‐generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences

JE Zalapa, H Cuevas, H Zhu, S Steffan… - American journal of …, 2012 - Wiley Online Library
The application of next‐generation sequencing (NGS) technologies for the development of
simple sequence repeat (SSR) or microsatellite loci for genetic research in the botanical …

Mining and development of novel SSR markers using next generation sequencing (NGS) data in plants

S Taheri, T Lee Abdullah, MR Yusop, MM Hanafi… - Molecules, 2018 - mdpi.com
Microsatellites, or simple sequence repeats (SSRs), are one of the most informative and
multi-purpose genetic markers exploited in plant functional genomics. However, the …

Genome-wide simple sequence repeats (SSR) markers discovered from whole-genome sequence comparisons of multiple spinach accessions

G Bhattarai, A Shi, DR Kandel, N Solís-Gracia… - Scientific reports, 2021 - nature.com
The availability of well-assembled genome sequences and reduced sequencing costs have
enabled the resequencing of many additional accessions in several crops, thus facilitating …

There and back again; historical perspective and future directions for Vaccinium breeding and research studies

PP Edger, M Iorizzo, NV Bassil… - Horticulture …, 2022 - academic.oup.com
Abstract The genus Vaccinium L.(Ericaceae) contains a wide diversity of culturally and
economically important berry crop species. Consumer demand and scientific research in …

De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an …

M Iorizzo, D Senalik, M Szklarczyk, D Grzebelus… - BMC plant biology, 2012 - Springer
Background Sequence analysis of organelle genomes has revealed important aspects of
plant cell evolution. The scope of this study was to develop an approach for de novo …

Methods for development of microsatellite markers: an overview

S Senan, K Dhanya, B Sasikumar, TE Sheeja - 2014 - 14.139.189.23
Microsatellite or Simple Sequence Repeat (SSR) markers have evolved to the status of a
most versatile and popular genetic marker in a ubiquity of plant systems. Due to their co …

Complete plastid genome sequence of Vaccinium macrocarpon: structure, gene content, and rearrangements revealed by next generation sequencing

D Fajardo, D Senalik, M Ames, H Zhu, SA Steffan… - Tree Genetics & …, 2013 - Springer
The complete plastid genome sequence of the American cranberry (Vaccinium macrocarpon
Ait.) was reconstructed using next-generation sequencing data by in silico procedures. We …

Genome-Wide Mining, Characterization and Development of Microsatellite Markers in Gossypium Species

Q Wang, L Fang, J Chen, Y Hu, Z Si, S Wang… - Scientific reports, 2015 - nature.com
Although much research has been conducted to characterize microsatellites and develop
markers, the distribution of microsatellites remains ambiguous and the use of microsatellite …

Genome-wide characterization and development of SSR markers for genetic diversity analysis in northwestern Himalayas Walnut (Juglans regia L.)

H Itoo, RA Shah, S Qurat, A Jeelani, S Khursheed… - 3 Biotech, 2023 - Springer
In the present study, we designed and validated genome-wide polymorphic SSR markers
(110 SSRs) by mining the walnut genome. A total of 198,924 SSR loci were identified …

Domestication, genetics, and genomics of the American cranberry

N Vorsa, J Zalapa - Plant breeding reviews, 2019 - Wiley Online Library
Summary The American cranberry (Vaccinium macrocarpon Aiton) is an iconic fruit species
native to eastern North America. The United States is a leader in cranberry production …