[PDF][PDF] Gene body methylation in plants: mechanisms, functions, and important implications for understanding evolutionary processes

AM Muyle, DK Seymour, Y Lv, B Huettel… - Genome biology and …, 2022 - academic.oup.com
Gene body methylation (gbM) is an epigenetic mark where gene exons are methylated in
the CG context only, as opposed to CHG and CHH contexts (where H stands for A, C, or T) …

Machine learning: its challenges and opportunities in plant system biology

M Hesami, M Alizadeh, AMP Jones… - Applied Microbiology and …, 2022 - Springer
Sequencing technologies are evolving at a rapid pace, enabling the generation of massive
amounts of data in multiple dimensions (eg, genomics, epigenomics, transcriptomic …

Exploring the crop epigenome: a comparison of DNA methylation profiling techniques

DR Agius, A Kapazoglou, E Avramidou… - Frontiers in Plant …, 2023 - frontiersin.org
Epigenetic modifications play a vital role in the preservation of genome integrity and in the
regulation of gene expression. DNA methylation, one of the key mechanisms of epigenetic …

The sugar kelp Saccharina latissima I: recent advances in a changing climate

N Diehl, H Li, L Scheschonk… - Annals of …, 2024 - academic.oup.com
Abstract Background The sugar kelp Saccharina latissima is a Laminariales species widely
distributed in the Northern Hemisphere. Its physiology and ecology have been studied since …

Epigenetic variation: A major player in facilitating plant fitness under changing environmental conditions

VR Rajpal, P Rathore, S Mehta, N Wadhwa… - Frontiers in Cell and …, 2022 - frontiersin.org
Recent research in plant epigenetics has increased our understanding of how epigenetic
variability can contribute to adaptive phenotypic plasticity in natural populations. Studies …

[HTML][HTML] Epigenetics Regulation in Responses to Abiotic Factors in Plant Species: A Systematic Review

GS da Costa, AF Cerqueira, CR de Brito, MS Mielke… - Plants, 2024 - mdpi.com
Plants have several mechanisms to adapt or acclimate to environmental stress.
Morphological, physiological, or genetic changes are examples of complex plant responses …

Chloroplast DNA methylation in the kelp Saccharina latissima is determined by origin and possibly influenced by cultivation

L Scheschonk, AML Nilsen, K Bischof… - Evolutionary …, 2024 - Wiley Online Library
DNA cytosine methylation is an important epigenetic mechanism in genomic DNA. In most
land plants, it is absent in the chloroplast DNA. We detected methylation in the chloroplast …

[HTML][HTML] Molecular basis of intraspecific differentiation for heavy metal tolerance in the copper moss Scopelophila cataractae

MT Boquete, MW Schmid, NCAM Wagemaker… - Environmental and …, 2022 - Elsevier
The remarkable capacity of bryophytes to tolerate extremely challenging abiotic conditions
allows us to enhance our understanding of the diversity of molecular mechanisms involved …

High‐quality haplotype‐resolved genome assembly for ring‐cup oak (Quercus glauca) provides insight into oaks demographic dynamics

CS Luo, TT Li, XL Jiang, Y Song, TT Fan… - Molecular Ecology …, 2024 - Wiley Online Library
Quercus section Cyclobalanopsis represents a dominant woody lineage in East Asian
evergreen broadleaved forests. Regardless of its ecological and economic importance, little …

Unlocking crops' genetic potential: Advances in genome and epigenome editing of regulatory regions

N Ali, S Singh, R Garg - Current Opinion in Plant Biology, 2025 - Elsevier
Genome editing tools could precisely and efficiently target plant genomes leading to the
development of improved crops. Besides editing the coding regions, researchers can …