Three-dimensional protein structure prediction: Methods and computational strategies
A long standing problem in structural bioinformatics is to determine the three-dimensional (3-
D) structure of a protein when only a sequence of amino acid residues is given. Many …
D) structure of a protein when only a sequence of amino acid residues is given. Many …
General overview on structure prediction of twilight-zone proteins
Protein structure prediction from amino acid sequence has been one of the most challenging
aspects in computational structural biology despite significant progress in recent years …
aspects in computational structural biology despite significant progress in recent years …
Automated server predictions in CASP7
With each round of CASP (Critical Assessment of Techniques for Protein Structure
Prediction), automated prediction servers have played an increasingly important role. Today …
Prediction), automated prediction servers have played an increasingly important role. Today …
Protein‐structure prediction by recombination of fragments
JM Bujnicki - Chembiochem, 2006 - Wiley Online Library
The field of protein‐structure prediction has been revolutionized by the application of “mix‐
and‐match” methods both in template‐based homology modeling and in template‐free de …
and‐match” methods both in template‐based homology modeling and in template‐free de …
A historical perspective of template-based protein structure prediction
This chapter presents a broad and a historical overview of the problem of protein structure
prediction. Different structure prediction methods, including homology modeling, fold …
prediction. Different structure prediction methods, including homology modeling, fold …
Acceleration of sequence clustering using longest common subsequence filtering
Background Huge numbers of genomes can now be sequenced rapidly with recent
improvements in sequencing throughput. However, data analysis methods have not kept up …
improvements in sequencing throughput. However, data analysis methods have not kept up …
Entropy-accelerated exact clustering of protein decoys
Motivation: Clustering is commonly used to identify the best decoy among many generated
in protein structure prediction when using energy alone is insufficient. Calculation of the …
in protein structure prediction when using energy alone is insufficient. Calculation of the …
Local error estimates dramatically improve the utility of homology models for solving crystal structures by molecular replacement
Predicted structures submitted for CASP10 have been evaluated as molecular replacement
models against the corresponding sets of structure factor amplitudes. It has been found that …
models against the corresponding sets of structure factor amplitudes. It has been found that …
A coarse-grained Langevin molecular dynamics approach to de novo protein structure prediction
TN Sasaki, H Cetin, M Sasai - Biochemical and biophysical research …, 2008 - Elsevier
De novo prediction of protein structures, the prediction of structures from amino acid
sequences which are not similar to those of hitherto resolved structures, has been one of the …
sequences which are not similar to those of hitherto resolved structures, has been one of the …
Rational Designing of Novel Proteins Through Computational Approaches
KM Poluri, K Gulati, KM Poluri, K Gulati - Protein Engineering Techniques …, 2017 - Springer
Advances in the computational power has bestowed us with several structural bioinformatics
tools that one can utilize them to predict the structures/structural models of the unknown …
tools that one can utilize them to predict the structures/structural models of the unknown …