Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling

VN Uversky, CJ Oldfield… - Journal of Molecular …, 2005 - Wiley Online Library
Regulation, recognition and cell signaling involve the coordinated actions of many players.
To achieve this coordination, each participant must have a valid identification (ID) that is …

Structure and mechanism of the pepsin-like family of aspartic peptidases

BM Dunn - Chemical reviews, 2002 - ACS Publications
The last general review of the aspartic peptidase family was by David R. Davies in 1990. 1
Since then, several reviews on selected aspects of the structure and function of aspartic …

Preformed structural elements feature in partner recognition by intrinsically unstructured proteins

M Fuxreiter, I Simon, P Friedrich, P Tompa - Journal of molecular biology, 2004 - Elsevier
Intrinsically unstructured proteins (IUPs) are devoid of extensive structural order but often
display signs of local and limited residual structure. To explain their effective functioning, we …

The IDP-Specific Force Field ff14IDPSFF Improves the Conformer Sampling of Intrinsically Disordered Proteins

D Song, R Luo, HF Chen - Journal of chemical information and …, 2017 - ACS Publications
Intrinsically disordered proteins (IDPs) or intrinsically disordered regions do not have a fixed
tertiary structure but play key roles in signal regulation, molecule recognition, and drug …

Calcium-bound structure of calpain and its mechanism of inhibition by calpastatin

RA Hanna, RL Campbell, PL Davies - Nature, 2008 - nature.com
Calpains are non-lysosomal calcium-dependent cysteine proteinases that selectively cleave
proteins in response to calcium signals and thereby control cellular functions such as …

Proteases universally recognize beta strands in their active sites

JDA Tyndall, T Nall, DP Fairlie - Chemical Reviews, 2005 - ACS Publications
Among proteases or proteinases, the endopeptidases account for a significant proportion (∼
2%) of the human genome with over 550 defined members and a further 100 or so predicted …

Canonical protein inhibitors of serine proteases

D Krowarsch, T Cierpicki, F Jelen, J Otlewski - Cellular and molecular life …, 2003 - Springer
Serine proteases and their natural protein inhibitors are among the most intensively studied
protein complexes. About 20 structurally diverse inhibitor families have been identified …

Structured disorder and conformational selection

CJ Tsai, B Ma, YY Sham, S Kumar… - Proteins: Structure …, 2001 - Wiley Online Library
Traditionally, molecular disorder has been viewed as local or global instability. Molecules or
regions displaying disorder have been considered inherently unstructured. The term has …

Heparan sulfate regulates amyloid precursor protein processing by BACE1, the Alzheimer's β-secretase

Z Scholefield, EA Yates, G Wayne, A Amour… - The Journal of cell …, 2003 - rupress.org
Cleavage of amyloid precursor protein (APP) by the Alzheimer's β-secretase (BACE1) is a
key step in generating amyloid β-peptide, the main component of amyloid plaques. Here we …

Evolutionary mechanisms acting on proteinase inhibitor variability

JT Christeller - The FEBS journal, 2005 - Wiley Online Library
The interaction of proteinase inhibitors produced, in most cases, by host organisms and the
invasive proteinases of pathogens or parasites or the dietary proteinases of predators …