Discriminating self from non-self in nucleic acid sensing

M Schlee, G Hartmann - Nature Reviews Immunology, 2016 - nature.com
Innate immunity against pathogens relies on an array of immune receptors to detect
molecular patterns that are characteristic of the pathogens, including receptors that are …

Codon bias as a means to fine-tune gene expression

TEF Quax, NJ Claassens, D Söll, J van der Oost - Molecular cell, 2015 - cell.com
The redundancy of the genetic code implies that most amino acids are encoded by multiple
synonymous codons. In all domains of life, a biased frequency of synonymous codons is …

mRNA structure regulates protein expression through changes in functional half-life

DM Mauger, BJ Cabral, V Presnyak… - Proceedings of the …, 2019 - National Acad Sciences
Messenger RNAs (mRNAs) encode information in both their primary sequence and their
higher order structure. The independent contributions of factors like codon usage and …

CG dinucleotide suppression enables antiviral defence targeting non-self RNA

MA Takata, D Gonçalves-Carneiro, TM Zang, SJ Soll… - Nature, 2017 - nature.com
Vertebrate genomes exhibit marked CG suppression—that is, lower than expected numbers
of 5′-CG-3′ dinucleotides. This feature is likely to be due to C-to-T mutations that have …

Extreme genomic CpG deficiency in SARS-CoV-2 and evasion of host antiviral defense

X Xia - Molecular biology and evolution, 2020 - academic.oup.com
Wild mammalian species, including bats, constitute the natural reservoir of betacoronavirus
(including SARS, MERS, and the deadly SARS-CoV-2). Different hosts or host tissues …

Synthetic biology in the clinic: engineering vaccines, diagnostics, and therapeutics

X Tan, JH Letendre, JJ Collins, WW Wong - Cell, 2021 - cell.com
Synthetic biology is a design-driven discipline centered on engineering novel biological
functions through the discovery, characterization, and repurposing of molecular parts …

Insect-specific flaviviruses: a systematic review of their discovery, host range, mode of transmission, superinfection exclusion potential and genomic organization

BJ Blitvich, AE Firth - Viruses, 2015 - mdpi.com
There has been a dramatic increase in the number of insect-specific flaviviruses (ISFs)
discovered in the last decade. Historically, these viruses have generated limited interest due …

Clinical sequencing uncovers origins and evolution of Lassa virus

KG Andersen, BJ Shapiro, CB Matranga, R Sealfon… - Cell, 2015 - cell.com
Summary The 2013–2015 West African epidemic of Ebola virus disease (EVD) reminds us
of how little is known about biosafety level 4 viruses. Like Ebola virus, Lassa virus (LASV) …

Origins and challenges of viral dark matter

SR Krishnamurthy, D Wang - Virus research, 2017 - Elsevier
The accurate classification of viral dark matter–metagenomic sequences that originate from
viruses but do not align to any reference virus sequences–is one of the major obstacles in …

Synonymous codons: choose wisely for expression

CE Brule, EJ Grayhack - Trends in Genetics, 2017 - cell.com
The genetic code, which defines the amino acid sequence of a protein, also contains
information that influences the rate and efficiency of translation. Neither the mechanisms nor …