Limb development: a paradigm of gene regulation

F Petit, KE Sears, N Ahituv - Nature Reviews Genetics, 2017 - nature.com
The limb is a commonly used model system for developmental biology. Given the need for
precise control of complex signalling pathways to achieve proper patterning, the limb is also …

Structural diversity of p63 and p73 isoforms

C Osterburg, V Dötsch - Cell death & differentiation, 2022 - nature.com
The p53 protein family is the most studied protein family of all. Sequence analysis and
structure determination have revealed a high similarity of crucial domains between p53, p63 …

Global genomic profiling reveals an extensive p53-regulated autophagy program contributing to key p53 responses

DK Broz, SS Mello, KT Bieging, D Jiang… - Genes & …, 2013 - genesdev.cshlp.org
The mechanisms by which the p53 tumor suppressor acts remain incompletely understood.
To gain new insights into p53 biology, we used high-throughput sequencing to analyze …

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

L Song, Z Zhang, LL Grasfeder, AP Boyle… - Genome …, 2011 - genome.cshlp.org
The human body contains thousands of unique cell types, each with specialized functions.
Cell identity is governed in large part by gene transcription programs, which are determined …

Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade

JM Alvarez, AL Schinke, MD Brooks, A Pasquino… - Nature …, 2020 - nature.com
Dynamic reprogramming of gene regulatory networks (GRNs) enables organisms to rapidly
respond to environmental perturbation. However, the underlying transient interactions …

ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data

JH Yang, JH Li, S Jiang, H Zhou… - Nucleic acids research, 2013 - academic.oup.com
Long non-coding RNAs (lncRNAs) and microRNAs (miRNAs) represent two classes of
important non-coding RNAs in eukaryotes. Although these non-coding RNAs have been …

ΔNp63 knockout mice reveal its indispensable role as a master regulator of epithelial development and differentiation

RA Romano, K Smalley, C Magraw, VA Serna… - …, 2012 - journals.biologists.com
The transcription factor p63 is important in the development of the skin as p63-null mice
exhibit striking defects in embryonic epidermal morphogenesis. Understanding the …

ΔNp63 promotes stem cell activity in mammary gland development and basal-like breast cancer by enhancing Fzd7 expression and Wnt signalling

R Chakrabarti, Y Wei, J Hwang, X Hang… - Nature cell …, 2014 - nature.com
Emerging evidence suggests that cancer is populated and maintained by tumour-initiating
cells (TICs) with stem-like properties similar to those of adult tissue stem cells. Despite …

Coding exons function as tissue-specific enhancers of nearby genes

RY Birnbaum, EJ Clowney, O Agamy, MJ Kim… - Genome …, 2012 - genome.cshlp.org
Enhancers are essential gene regulatory elements whose alteration can lead to
morphological differences between species, developmental abnormalities, and human …

ZNF750 is a p63 target gene that induces KLF4 to drive terminal epidermal differentiation

GL Sen, LD Boxer, DE Webster, RT Bussat, K Qu… - Developmental cell, 2012 - cell.com
Disrupted epidermal differentiation characterizes numerous diseases that impact> 25% of
the population. In a search for dominant mediators of differentiation, we defined a …