Atomic force microscopy-based mechanobiology

M Krieg, G Fläschner, D Alsteens, BM Gaub… - Nature Reviews …, 2019 - nature.com
Mechanobiology emerges at the crossroads of medicine, biology, biophysics and
engineering and describes how the responses of proteins, cells, tissues and organs to …

Atomic force microscopy-based force spectroscopy and multiparametric imaging of biomolecular and cellular systems

DJ Müller, AC Dumitru, C Lo Giudice… - Chemical …, 2020 - ACS Publications
During the last three decades, a series of key technological improvements turned atomic
force microscopy (AFM) into a nanoscopic laboratory to directly observe and chemically …

Cellulosomes: bacterial nanomachines for dismantling plant polysaccharides

L Artzi, EA Bayer, S Moraïs - Nature Reviews Microbiology, 2017 - nature.com
Cellulosomes are multienzyme complexes that are produced by anaerobic cellulolytic
bacteria for the degradation of lignocellulosic biomass. They comprise a complex of …

NAMD goes quantum: an integrative suite for hybrid simulations

MCR Melo, RC Bernardi, T Rudack, M Scheurer… - Nature …, 2018 - nature.com
Hybrid methods that combine quantum mechanics (QM) and molecular mechanics (MM) can
be applied to studies of reaction mechanisms in locations ranging from active sites of small …

Single-molecule force stability of the SARS-CoV-2–ACE2 interface in variants-of-concern

MS Bauer, S Gruber, A Hausch, MCR Melo… - Nature …, 2024 - nature.com
Mutations in SARS-CoV-2 have shown effective evasion of population immunity and
increased affinity to the cellular receptor angiotensin-converting enzyme 2 (ACE2) …

Atomic force microscopy-based characterization and design of biointerfaces

D Alsteens, HE Gaub, R Newton… - Nature Reviews …, 2017 - nature.com
Atomic force microscopy (AFM)-based methods have matured into a powerful nanoscopic
platform, enabling the characterization of a wide range of biological and synthetic …

QwikMD—integrative molecular dynamics toolkit for novices and experts

JV Ribeiro, RC Bernardi, T Rudack, JE Stone… - Scientific reports, 2016 - nature.com
The proper functioning of biomolecules in living cells requires them to assume particular
structures and to undergo conformational changes. Both biomolecular structure and motion …

Generalized correlation-based dynamical network analysis: a new high-performance approach for identifying allosteric communications in molecular dynamics …

MCR Melo, RC Bernardi… - The Journal of …, 2020 - pubs.aip.org
Molecular interactions are essential for regulation of cellular processes from the formation of
multi-protein complexes to the allosteric activation of enzymes. Identifying the essential …

Staphylococcus aureus clumping factor A is a force-sensitive molecular switch that activates bacterial adhesion

P Herman-Bausier, C Labate… - Proceedings of the …, 2018 - National Acad Sciences
Clumping factor A (ClfA), a cell-wall–anchored protein from Staphylococcus aureus, is a
virulence factor in various infections and facilitates the colonization of protein-coated …

A tethered ligand assay to probe SARS-CoV-2: ACE2 interactions

MS Bauer, S Gruber, A Hausch… - Proceedings of the …, 2022 - National Acad Sciences
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections are initiated by
attachment of the receptor-binding domain (RBD) on the viral Spike protein to angiotensin …