Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with …

LA Lewis, K Polanski, M de Torres-Zabala… - The Plant …, 2015 - academic.oup.com
Transcriptional reprogramming is integral to effective plant defense. Pathogen effectors act
transcriptionally and posttranscriptionally to suppress defense responses. A major challenge …

[HTML][HTML] Estrogen receptor α controls a gene network in luminal-like breast cancer cells comprising multiple transcription factors and microRNAs

L Cicatiello, M Mutarelli, OMV Grober, O Paris… - The American journal of …, 2010 - Elsevier
Luminal-like breast tumor cells express estrogen receptor α (ERα), a member of the nuclear
receptor family of ligand-activated transcription factors that controls their proliferation …

Id proteins synchronize stemness and anchorage to the niche of neural stem cells

F Niola, X Zhao, D Singh, A Castano, R Sullivan… - Nature cell …, 2012 - nature.com
Stem-cell functions require activation of stem-cell-intrinsic transcriptional programs and
extracellular interaction with a niche microenvironment. How the transcriptional machinery …

[HTML][HTML] Temporal, spatial, and phenotypical changes of PDGFRα expressing fibroblasts during late lung development

M Endale, S Ahlfeld, E Bao, X Chen, J Green… - Developmental …, 2017 - Elsevier
Many studies have investigated the source and role of epithelial progenitors during lung
development; such information is limited for fibroblast populations and their complex role in …

A simple approach to ranking differentially expressed gene expression time courses through Gaussian process regression

AA Kalaitzis, ND Lawrence - BMC bioinformatics, 2011 - Springer
Background The analysis of gene expression from time series underpins many biological
studies. Two basic forms of analysis recur for data of this type: removing inactive (quiet) …

Comparative analysis of pathology and behavioural phenotypes in mouse models of Huntington's disease

SP Brooks, L Jones, SB Dunnett - Brain research bulletin, 2012 - Elsevier
The longitudinal characterisation of Huntington's disease (HD) mouse lines is essential for
the understanding of the differential developmental time course, nature and severity of …

The rhizosphere-competent entomopathogen Metarhizium anisopliae expresses a specific subset of genes in plant root exudate

M Pava-Ripoll, C Angelini, W Fang, S Wang… - …, 2011 - microbiologyresearch.org
Metarhizium anisopliae and Beauveria bassiana are ubiquitous insect pathogens and
possible plant symbionts, as some strains are endophytic or colonize the rhizosphere. We …

A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series

O Stegle, KJ Denby, EJ Cooke, DL Wild… - Journal of …, 2010 - liebertpub.com
Understanding the regulatory mechanisms that are responsible for an organism's response
to environmental change is an important issue in molecular biology. A first and important …

Transcriptional programs controlling perinatal lung maturation

Y Xu, Y Wang, V Besnard, M Ikegami, SE Wert… - 2012 - journals.plos.org
The timing of lung maturation is controlled precisely by complex genetic and cellular
programs. Lung immaturity following preterm birth frequently results in Respiratory Distress …

Environmental regulation of reproductive phase change in Agaricus bisporus by 1-octen-3-ol, temperature and CO2

DC Eastwood, B Herman, R Noble… - Fungal Genetics and …, 2013 - Elsevier
Reproductive phase change from vegetative mycelium to the initiation of fruiting in Agaricus
bisporus is regulated in large part by the sensing of environmental conditions. A model is …