Conservation biology needs a microbial renaissance: a call for the consideration of host-associated microbiota in wildlife management practices

BK Trevelline, SS Fontaine… - Proceedings of the …, 2019 - royalsocietypublishing.org
The central aim of conservation biology is to understand and mitigate the effects of human
activities on biodiversity. To successfully achieve this objective, researchers must take an …

Captivity and animal microbiomes: potential roles of microbiota for influencing animal conservation

JW Dallas, RW Warne - Microbial ecology, 2023 - Springer
During the ongoing biodiversity crisis, captive conservation and breeding programs offer a
refuge for species to persist and provide source populations for reintroduction efforts …

Inference-based accuracy of metagenome prediction tools varies across sample types and functional categories

S Sun, RB Jones, AA Fodor - Microbiome, 2020 - Springer
Background Despite recent decreases in the cost of sequencing, shotgun metagenome
sequencing remains more expensive compared with 16S rRNA amplicon sequencing …

The microbiome in threatened species conservation

AG West, DW Waite, P Deines, DG Bourne… - Biological …, 2019 - Elsevier
As global biodiversity continues to reduce at an alarming rate, threatened species are
increasingly being brought under intensive management or into captivity. However, current …

The effects of captivity on the mammalian gut microbiome

VJ McKenzie, SJ Song, F Delsuc… - Integrative and …, 2017 - academic.oup.com
Recent studies increasingly note the effect of captivity or the built environment on the
microbiome of humans and other animals. As symbiotic microbes are essential to many …

Microbiome evolution along divergent branches of the vertebrate tree of life: what is known and unknown

TJ Colston, CR Jackson - Molecular ecology, 2016 - Wiley Online Library
Vertebrates harbour microbes both internally and externally, and collectively, these
microorganisms (the 'microbiome') contain genes that outnumber the host's genetic …

Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome

RSC de Souza, VK Okura, JSL Armanhi, B Jorrín… - Scientific Reports, 2016 - nature.com
Plant microbiome and its manipulation herald a new era for plant biotechnology with the
potential to benefit sustainable crop production. However, studies evaluating the diversity …

Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions

F Cornejo-Granados, AA Lopez-Zavala… - Scientific reports, 2017 - nature.com
Crustaceans form the second largest subphylum on Earth, which includes Litopeneaus
vannamei (Pacific whiteleg shrimp), one of the most cultured shrimp worldwide. Despite …

The skin microbiome of vertebrates

AA Ross, A Rodrigues Hoffmann, JD Neufeld - Microbiome, 2019 - Springer
The skin constitutes the primary physical barrier between vertebrates and their external
environment. Characterization of skin microorganisms is essential for understanding how a …

One health relationships between human, animal, and environmental microbiomes: a mini-review

P Trinh, JR Zaneveld, S Safranek… - Frontiers in public …, 2018 - frontiersin.org
The One Health concept stresses the ecological relationships between human, animal, and
environmental health. Much of the One Health literature to date has examined the transfer of …