Mass spectrometry-based techniques to elucidate the sugar code

M Grabarics, M Lettow, C Kirschbaum, K Greis… - Chemical …, 2021 - ACS Publications
Cells encode information in the sequence of biopolymers, such as nucleic acids, proteins,
and glycans. Although glycans are essential to all living organisms, surprisingly little is …

Trapped ion mobility spectrometry: A short review

ME Ridgeway, M Lubeck, J Jordens, M Mann… - International journal of …, 2018 - Elsevier
Trapped ion mobility spectrometry (TIMS) hybridized with mass spectrometry (MS) is a
relatively recent advance in the field of ion mobility mass spectrometry (IMMS). The basic …

diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition

F Meier, AD Brunner, M Frank, A Ha, I Bludau… - Nature …, 2020 - nature.com
Data-independent acquisition modes isolate and concurrently fragment populations of
different precursors by cycling through segments of a predefined precursor m/z range …

Online parallel accumulation–serial fragmentation (PASEF) with a novel trapped ion mobility mass spectrometer

F Meier, AD Brunner, S Koch, H Koch, M Lubeck… - Molecular & Cellular …, 2018 - ASBMB
In bottom-up proteomics, peptides are separated by liquid chromatography with elution peak
widths in the range of seconds, whereas mass spectra are acquired in about 100 …

Parallel accumulation–serial fragmentation (PASEF): multiplying sequencing speed and sensitivity by synchronized scans in a trapped ion mobility device

F Meier, S Beck, N Grassl, M Lubeck… - Journal of proteome …, 2015 - ACS Publications
In liquid chromatography-mass spectrometry (LC-MS)-based proteomics, many precursors
elute from the column simultaneously. In data-dependent analyses, these precursors are …

A scalable approach for protein false discovery rate estimation in large proteomic data sets [s]

MM Savitski, M Wilhelm, H Hahne, B Kuster… - Molecular & Cellular …, 2015 - ASBMB
Calculating the number of confidently identified proteins and estimating false discovery rate
(FDR) is a challenge when analyzing very large proteomic data sets such as entire human …

Trapped ion mobility spectrometry and parallel accumulation–serial fragmentation in proteomics

F Meier, MA Park, M Mann - Molecular & Cellular Proteomics, 2021 - ASBMB
Recent advances in efficiency and ease of implementation have rekindled interest in ion
mobility spectrometry, a technique that separates gas phase ions by their size and shape …

Orbitrap-based mass and charge analysis of single molecules

E Deslignière, A Rolland, EHTM Ebberink… - Accounts of chemical …, 2023 - ACS Publications
Conspectus Native mass spectrometry is nowadays widely used for determining the mass of
intact proteins and their noncovalent biomolecular assemblies. While this technology …

MaxQuant software for ion mobility enhanced shotgun proteomics

N Prianichnikov, H Koch, S Koch, M Lubeck… - Molecular & Cellular …, 2020 - ASBMB
Ion mobility can add a dimension to LC-MS based shotgun proteomics which has the
potential to boost proteome coverage, quantification accuracy and dynamic range. Required …

Adding a new separation dimension to MS and LC–MS: what is the utility of ion mobility spectrometry?

V d'Atri, T Causon, O Hernandez‐Alba… - Journal of separation …, 2018 - Wiley Online Library
Ion mobility spectrometry is an analytical technique known for more than 100 years, which
entails separating ions in the gas phase based on their size, shape, and charge. While ion …