Emerging themes in CryoEM─ Single particle analysis image processing

JL Vilas, JM Carazo, COS Sorzano - Chemical Reviews, 2022 - ACS Publications
Cryo-electron microscopy (CryoEM) has become a vital technique in structural biology. It is
an interdisciplinary field that takes advantage of advances in biochemistry, physics, and …

Computational methods for single-particle electron cryomicroscopy

A Singer, FJ Sigworth - Annual review of biomedical data …, 2020 - annualreviews.org
Single-particle electron cryomicroscopy (cryo-EM) is an increasingly popular technique for
elucidating the three-dimensional (3D) structure of proteins and other biologically significant …

Subunit and chlorophyll organization of the plant photosystem II supercomplex

LS van Bezouwen, S Caffarri, RS Kale, R Kouřil… - Nature Plants, 2017 - nature.com
Photosystem II (PSII) is a light-driven protein, involved in the primary reactions of
photosynthesis. In plant photosynthetic membranes PSII forms large multisubunit …

HEMNMA-3D: cryo electron tomography method based on normal mode analysis to study continuous conformational variability of macromolecular complexes

M Harastani, M Eltsov, A Leforestier… - Frontiers in molecular …, 2021 - frontiersin.org
Cryogenic electron tomography (cryo-ET) allows structural determination of biomolecules in
their native environment (in situ). Its potential of providing information on the dynamics of …

Modelling structures in cryo-EM maps

S Malhotra, S Träger, M Dal Peraro, M Topf - Current Opinion in Structural …, 2019 - Elsevier
Highlights•Approaches to the structure determination and modelling of macromolecular
assemblies depend on the resolution of their cryo-EM map.•Insights into structure dynamics …

Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy

COS Sorzano, A Jiménez, J Mota, JL Vilas… - … Section F: Structural …, 2019 - journals.iucr.org
Single-particle analysis by electron microscopy is a well established technique for analyzing
the three-dimensional structures of biological macromolecules. Besides its ability to produce …

Advances in xmipp for cryo–electron microscopy: From xmipp to scipion

D Strelak, A Jiménez-Moreno, JL Vilas… - Molecules, 2021 - mdpi.com
Xmipp is an open-source software package consisting of multiple programs for processing
data originating from electron microscopy and electron tomography, designed and managed …

Hybrid electron microscopy normal mode analysis with scipion

M Harastani, COS Sorzano, S Jonić - Protein Science, 2020 - Wiley Online Library
Abstract Hybrid Electron Microscopy Normal Mode Analysis (HEMNMA) method was
introduced in 2014. HEMNMA computes normal modes of a reference model (an atomic …

[HTML][HTML] Integrative/hybrid modeling approaches for studying biomolecules

A Srivastava, SP Tiwari, O Miyashita, F Tama - Journal of molecular biology, 2020 - Elsevier
The structural and dynamical characterization of biomolecules holds central importance in
the endeavor to understand the molecular mechanisms regulating living systems. However …

Computational methods for analyzing conformational variability of macromolecular complexes from cryo-electron microscopy images

S Jonić - Current opinion in structural biology, 2017 - Elsevier
Highlights•Recent cryo-EM technology allows near-atomic structural resolution of many
complexes.•Conformational changes, functionally relevant, hinder higher resolution of …