50 years of Arabidopsis research: highlights and future directions
The year 2014 marked the 25th International Conference on Arabidopsis Research. In the
50 yr since the first International Conference on Arabidopsis Research, held in 1965 in …
50 yr since the first International Conference on Arabidopsis Research, held in 1965 in …
Lessons from domestication: targeting cis-regulatory elements for crop improvement
G Swinnen, A Goossens, L Pauwels - Trends in plant science, 2016 - cell.com
Domestication of wild plant species has provided us with crops that serve our human
nutritional needs. Advanced DNA sequencing has propelled the unveiling of underlying …
nutritional needs. Advanced DNA sequencing has propelled the unveiling of underlying …
TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information
SR Kulkarni, D Vaneechoutte… - Nucleic acids …, 2018 - academic.oup.com
A gene regulatory network (GRN) is a collection of regulatory interactions between
transcription factors (TFs) and their target genes. GRNs control different biological processes …
transcription factors (TFs) and their target genes. GRNs control different biological processes …
Computational inference of gene regulatory networks: approaches, limitations and opportunities
Gene regulatory networks lie at the core of cell function control. In E. coli and S. cerevisiae,
the study of gene regulatory networks has led to the discovery of regulatory mechanisms …
the study of gene regulatory networks has led to the discovery of regulatory mechanisms …
Navigating the transcriptional roadmap regulating plant secondary cell wall deposition
The current status of lignocellulosic biomass as an invaluable resource in industry,
agriculture, and health has spurred increased interest in understanding the transcriptional …
agriculture, and health has spurred increased interest in understanding the transcriptional …
A Functional and Evolutionary Perspective on Transcription Factor Binding in Arabidopsis thaliana
Understanding the mechanisms underlying gene regulation is paramount to comprehend
the translation from genotype to phenotype. The two are connected by gene expression, and …
the translation from genotype to phenotype. The two are connected by gene expression, and …
MINI‐AC: inference of plant gene regulatory networks using bulk or single‐cell accessible chromatin profiles
N Manosalva Pérez, C Ferrari, J Engelhorn… - The Plant …, 2024 - Wiley Online Library
Gene regulatory networks (GRNs) represent the interactions between transcription factors
(TF) and their target genes. Plant GRNs control transcriptional programs involved in growth …
(TF) and their target genes. Plant GRNs control transcriptional programs involved in growth …
Meta gene regulatory networks in maize highlight functionally relevant regulatory interactions
The regulation of gene expression is central to many biological processes. Gene regulatory
networks (GRNs) link transcription factors (TFs) to their target genes and represent maps of …
networks (GRNs) link transcription factors (TFs) to their target genes and represent maps of …
A maize gene regulatory network for phenolic metabolism
The translation of the genotype into phenotype, represented for example by the expression
of genes encoding enzymes required for the biosynthesis of phytochemicals that are …
of genes encoding enzymes required for the biosynthesis of phytochemicals that are …
Topological and statistical analyses of gene regulatory networks reveal unifying yet quantitatively different emergent properties
WZ Ouma, K Pogacar, E Grotewold - PLoS computational biology, 2018 - journals.plos.org
Understanding complexity in physical, biological, social and information systems is
predicated on describing interactions amongst different components. Advances in genomics …
predicated on describing interactions amongst different components. Advances in genomics …