From hairballs to hypotheses–biological insights from microbial networks

L Röttjers, K Faust - FEMS microbiology reviews, 2018 - academic.oup.com
Microbial networks are an increasingly popular tool to investigate microbial community
structure, as they integrate multiple types of information and may represent systems-level …

[HTML][HTML] Microbiome in cancer: Role in carcinogenesis and impact in therapeutic strategies

MM Rahman, MR Islam, S Shohag, MT Ahasan… - Biomedicine & …, 2022 - Elsevier
Cancer is the world's second-leading cause of death, and the involvement of microbes in a
range of diseases, including cancer, is well established. The gut microbiota is known to play …

The microbiome and cancer

B Goodman, H Gardner - The Journal of pathology, 2018 - Wiley Online Library
Humans coexist with a vast bacterial, fungal and viral microbiome with which we have
coevolved for millions of years. Several long recognized epidemiological associations …

Computational methods for gene regulatory networks reconstruction and analysis: a review

FM Delgado, F Gómez-Vela - Artificial intelligence in medicine, 2019 - Elsevier
In the recent years, the vast amount of genetic information generated by new-generation
approaches, have led to the need of new data handling methods. The integrative analysis of …

Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes

CY Kim, M Lee, S Yang, K Kim, D Yong, HR Kim… - Genome Medicine, 2021 - Springer
Background Metagenome sampling bias for geographical location and lifestyle is partially
responsible for the incomplete catalog of reference genomes of gut microbial species. Thus …

[HTML][HTML] Rational use of prebiotics for gut microbiota alterations: Specific bacterial phylotypes and related mechanisms

S Wang, Y Xiao, F Tian, J Zhao, H Zhang, Q Zhai… - Journal of Functional …, 2020 - Elsevier
Prebiotics play a widely recognized role in the regulation of intestinal microbiota, but most
related studies have not been explored beyond the genus level. In recent years, some newly …

Low-abundant microorganisms: the human microbiome's dark matter, a scoping review

JA Cena, J Zhang, D Deng… - Frontiers in cellular and …, 2021 - frontiersin.org
Research on the human microbiome has mainly been restricted to the identification of most
abundant microbiota associated with health or disease. Their abundance may reflect their …

Mapping the ecological networks of microbial communities

Y Xiao, MT Angulo, J Friedman, MK Waldor… - Nature …, 2017 - nature.com
Mapping the ecological networks of microbial communities is a necessary step toward
understanding their assembly rules and predicting their temporal behavior. However …

Connectivity and complex systems: learning from a multi-disciplinary perspective

L Turnbull, MT Hütt, AA Ioannides, S Kininmonth… - Applied Network …, 2018 - Springer
In recent years, parallel developments in disparate disciplines have focused on what has
come to be termed connectivity; a concept used in understanding and describing complex …

Gut microbiota alteration in adolescent anorexia nervosa does not normalize with short‐term weight restoration

N Schulz, M Belheouane, B Dahmen… - … Journal of eating …, 2021 - Wiley Online Library
Objective Gut microbiota are linked to metabolic function, body weight regulation, and brain
and behavioral changes. Alteration of gut microbiota is repeatedly demonstrated in adults …