The interplay of histone modifications–writers that read

T Zhang, S Cooper, N Brockdorff - EMBO reports, 2015 - embopress.org
Histones are subject to a vast array of posttranslational modifications including acetylation,
methylation, phosphorylation, and ubiquitylation. The writers of these modifications play …

Histone sumoylation and chromatin dynamics

HY Ryu, M Hochstrasser - Nucleic Acids Research, 2021 - academic.oup.com
Chromatin structure and gene expression are dynamically controlled by post-translational
modifications (PTMs) on histone proteins, including ubiquitylation, methylation, acetylation …

The Ubiquitin–Proteasome System of Saccharomyces cerevisiae

D Finley, HD Ulrich, T Sommer, P Kaiser - Genetics, 2012 - academic.oup.com
Protein modifications provide cells with exquisite temporal and spatial control of protein
function. Ubiquitin is among the most important modifiers, serving both to target hundreds of …

Histone ubiquitination and deubiquitination in transcription, DNA damage response, and cancer

J Cao, Q Yan - Frontiers in oncology, 2012 - frontiersin.org
Histone post-transcriptional modifications play essential roles in regulation of all DNA
related processes. Among them, histone ubiquitination has been discovered for more than …

Determinants of histone H3K4 methylation patterns

LM Soares, PC He, Y Chun, H Suh, TS Kim… - Molecular cell, 2017 - cell.com
Various factors differentially recognize trimethylated histone H3 lysine 4 (H3K4me3) near
promoters, H3K4me2 just downstream, and promoter-distal H3K4me1 to modulate gene …

The Paf1 complex: a keystone of nuclear regulation operating at the interface of transcription and chromatin

AM Francette, SA Tripplehorn, KM Arndt - Journal of molecular biology, 2021 - Elsevier
The regulation of transcription by RNA polymerase II is closely intertwined with the
regulation of chromatin structure. A host of proteins required for the disassembly …

The SAGA coactivator complex acts on the whole transcribed genome and is required for RNA polymerase II transcription

J Bonnet, CY Wang, T Baptista, SD Vincent… - Genes & …, 2014 - genesdev.cshlp.org
The SAGA (Spt–Ada–Gcn5 acetyltransferase) coactivator complex contains distinct
chromatin-modifying activities and is recruited by DNA-bound activators to regulate the …

[HTML][HTML] Sub-nucleosomal genome structure reveals distinct nucleosome folding motifs

M Ohno, T Ando, DG Priest, V Kumar, Y Yoshida… - Cell, 2019 - cell.com
Elucidating the global and local rules that govern genome-wide, hierarchical chromatin
architecture remains a critical challenge. Current high-throughput chromosome …

Genome-wide function of H2B ubiquitylation in promoter and genic regions

K Batta, Z Zhang, K Yen, DB Goffman… - Genes & …, 2011 - genesdev.cshlp.org
Nucleosomal organization in and around genes may contribute substantially to
transcriptional regulation. The contribution of histone modifications to genome-wide …

The histone modification domain of Paf1 complex subunit Rtf1 directly stimulates H2B ubiquitylation through an interaction with Rad6

SB Van Oss, MK Shirra, AR Bataille, AD Wier, K Yen… - Molecular cell, 2016 - cell.com
The five-subunit yeast Paf1 complex (Paf1C) regulates all stages of transcription and is
critical for the monoubiquitylation of histone H2B (H2Bub), a modification that broadly …