Trialdura: Hierarchical attention transformer for interpretable clinical trial duration prediction

L Yue, J Li, S Xing, MZ Islam, B Xia, T Fu… - arXiv preprint arXiv …, 2024 - arxiv.org
The clinical trial process, a critical phase in drug development, is essential for developing
new treatments. The primary goal of interventional clinical trials is to evaluate the safety and …

Clinicalagent: Clinical trial multi-agent system with large language model-based reasoning

L Yue, S Xing, J Chen, T Fu - Proceedings of the 15th ACM International …, 2024 - dl.acm.org
Large Language Models (LLMs) and multi-agent systems have shown impressive
capabilities in natural language tasks but face challenges in clinical trial applications …

DeepProtein: Deep Learning Library and Benchmark for Protein Sequence Learning

J Xie, Y Zhao, T Fu - arXiv preprint arXiv:2410.02023, 2024 - arxiv.org
In recent years, deep learning has revolutionized the field of protein science, enabling
advancements in predicting protein properties, structural folding and interactions. This paper …

Protein-Mamba: Biological Mamba Models for Protein Function Prediction

B Xu, Y Lu, Y Inoue, N Lee, T Fu, J Chen - arXiv preprint arXiv:2409.14617, 2024 - arxiv.org
Protein function prediction is a pivotal task in drug discovery, significantly impacting the
development of effective and safe therapeutics. Traditional machine learning models often …

Accelerated Markov Chain Monte Carlo Using Adaptive Weighting Scheme

Y Wang, W Chen, S Shan - arXiv preprint arXiv:2408.12888, 2024 - arxiv.org
Gibbs sampling is one of the most commonly used Markov Chain Monte Carlo (MCMC)
algorithms due to its simplicity and efficiency. It cycles through the latent variables, sampling …