Dynamic flexibility in the light reactions of photosynthesis governed by both electron and proton transfer reactions

DM Kramer, TJ Avenson, GE Edwards - Trends in plant science, 2004 - cell.com
Plant photosynthesis performs the remarkable feat of converting light energy into usable
chemical forms, which involves taming highly reactive intermediates without harming plant …

Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism

CT Trinh, A Wlaschin, F Srienc - Applied microbiology and biotechnology, 2009 - Springer
Elementary mode analysis is a useful metabolic pathway analysis tool to identify the
structure of a metabolic network that links the cellular phenotype to the corresponding …

Plasticity in light reactions of photosynthesis for energy production and photoprotection

JA Cruz, TJ Avenson, A Kanazawa… - Journal of …, 2005 - academic.oup.com
Plant photosynthesis channels some of the most highly reactive intermediates in biology, in
a way that captures a large fraction of their energy to power the plant. A viable …

The Metabolic Network of Synechocystis sp. PCC 6803: Systemic Properties of Autotrophic Growth

H Knoop, Y Zilliges, W Lockau, R Steuer - Plant physiology, 2010 - academic.oup.com
Unicellular cyanobacteria have attracted growing attention as potential host organisms for
the production of valuable organic products and provide an ideal model to understand …

Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration

HM Sauro, M Hucka, A Finney, C Wellock… - Omics A Journal of …, 2003 - liebertpub.com
Researchers in quantitative systems biology make use of a large number of different
software packages for modelling, analysis, visualization, and general data manipulation. In …

Stoichiometric modelling of cell metabolism

F Llaneras, J Picó - Journal of bioscience and bioengineering, 2008 - Elsevier
There are several methodologies based on representations of cell metabolism that share
two characteristics: the use of a metabolic network and the assumption of pseudosteady …

Metabolic flux analysis in plants: coping with complexity

DK Allen, IGL Libourel… - Plant, cell & environment, 2009 - Wiley Online Library
Theory and experience in metabolic engineering both show that metabolism operates at the
network level. In plants, this complexity is compounded by a high degree of …

Model-assisted metabolic engineering of Escherichia coli for long chain alkane and alcohol production

Z Fatma, H Hartman, MG Poolman, DA Fell… - Metabolic …, 2018 - Elsevier
Biologically-derived hydrocarbons are considered to have great potential as next-generation
biofuels owing to the similarity of their chemical properties to contemporary diesel and jet …

Rhizobium-linked nutritional and phytochemical changes under multitrophic functional contexts in sustainable food systems

DMW Ochieno, EM Karoney, EK Muge… - … in Sustainable Food …, 2021 - frontiersin.org
Rhizobia are bacteria that exhibit both endophytic and free-living lifestyles. Endophytic
rhizobial strains are widely known to infect leguminous host plants, while some do infect non …

Experimental and mathematical approaches to modeling plant metabolic networks

R Rios-Estepa, BM Lange - Phytochemistry, 2007 - Elsevier
To support their sessile and autotrophic lifestyle higher plants have evolved elaborate
networks of metabolic pathways. Dynamic changes in these metabolic networks are among …