The challenge of emerging and re-emerging infectious diseases

DM Morens, GK Folkers, AS Fauci - Nature, 2004 - nature.com
Infectious diseases have for centuries ranked with wars and famine as major challenges to
human progress and survival. They remain among the leading causes of death and …

Time‐dependent rates of molecular evolution

SYW Ho, R Lanfear, L Bromham, MJ Phillips… - Molecular …, 2011 - Wiley Online Library
For over half a century, it has been known that the rate of morphological evolution appears
to vary with the time frame of measurement. Rates of microevolutionary change, measured …

The population genetics of dN/dS

S Kryazhimskiy, JB Plotkin - PLoS genetics, 2008 - journals.plos.org
Evolutionary pressures on proteins are often quantified by the ratio of substitution rates at
non-synonymous and synonymous sites. The dN/dS ratio was originally developed for …

Chimpanzee reservoirs of pandemic and nonpandemic HIV-1

BF Keele, F Van Heuverswyn, Y Li, E Bailes… - Science, 2006 - science.org
Human immunodeficiency virus type 1 (HIV-1), the cause of human acquired
immunodeficiency syndrome (AIDS), is a zoonotic infection of staggering proportions and …

Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960

M Worobey, M Gemmel, DE Teuwen, T Haselkorn… - Nature, 2008 - nature.com
Human immunodeficiency virus type 1 (HIV-1) sequences that pre-date the recognition of
AIDS are critical to defining the time of origin and the timescale of virus evolution,. A viral …

The evolving epidemiology of HIV/AIDS

KM De Cock, HW Jaffe, JW Curran - Aids, 2012 - journals.lww.com
Following its recognition in 1981, the HIV/AIDS epidemic has evolved to become the
greatest challenge in global health, with some 34 million persons living with HIV worldwide …

The evolution of HIV-1 and the origin of AIDS

PM Sharp, BH Hahn - … of the Royal Society B: Biological …, 2010 - royalsocietypublishing.org
The major cause of acquired immune deficiency syndrome (AIDS) is human
immunodeficiency virus type 1 (HIV-1). We have been using evolutionary comparisons to …

The causes and consequences of HIV evolution

A Rambaut, D Posada, KA Crandall… - Nature Reviews …, 2004 - nature.com
Understanding the evolution of the human immunodeficiency virus (HIV) is crucial for
reconstructing its origin, deciphering its interaction with the immune system and developing …

Tracing the origin and history of the HIV-2 epidemic

P Lemey, OG Pybus, B Wang… - Proceedings of the …, 2003 - National Acad Sciences
In this study we date the introduction of HIV-2 into the human population and estimate the
epidemic history of HIV-2 subtype A in Guinea-Bissau, the putative geographic origin of HIV …

SARS-CoV-2: tracing the origin, tracking the evolution

K Voskarides - BMC Medical Genomics, 2022 - Springer
The origin of SARS-CoV-2 is uncertain. Findings support a “bat origin” but results are not
highly convincing. Studies found evidence that SARS-CoV-2 was around for many years …