Transcriptional regulation and chromatin dynamics at DNA double-strand breaks

S Min, JH Ji, Y Heo, H Cho - Experimental & Molecular Medicine, 2022 - nature.com
In eukaryotic cells, DNA damage can occur at any time and at any chromatin locus, including
loci at which active transcription is taking place. DNA double-strand breaks affect chromatin …

Traffic light at DSB–transit regulation between gene transcription and DNA repair

S Modafferi, F Esposito, S Tavella, U Gioia… - FEBS …, 2024 - Wiley Online Library
Transcription of actively expressed genes is dampened for kilobases around DNA lesions
via chromatin modifications. This is believed to favour repair and prevent genome instability …

Single-cell RNA transcriptome helps define the limbal/corneal epithelial stem/early transit amplifying cells and how autophagy affects this population

N Kaplan, J Wang, B Wray, P Patel… - … & visual science, 2019 - iovs.arvojournals.org
Purpose: Single-cell RNA-sequencing (scRNA-seq) was used to interrogate the relatively
rare stem (SC) and early transit amplifying (TA) cell populations in limbal/corneal epithelia …

Fludarabine increases nuclease-free AAV-and CRISPR/Cas9-mediated homologous recombination in mice

S Tsuji, CJ Stephens, G Bortolussi, F Zhang… - Nature …, 2022 - nature.com
Homologous recombination (HR)-based gene therapy using adeno-associated viruses (AAV-
HR) without nucleases has several advantages over classic gene therapy, especially the …

SIX1 transcription factor: A review of cellular functions and regulatory dynamics

A Rafiq, S Aashaq, I Jan, MA Beigh - International journal of biological …, 2021 - Elsevier
Abstract Sine Oculis Homeobox 1 (SIX1) is a member of homeobox transcription factor
family having pivotal roles in organismal development and differentiation. This protein …

Long non-coding RNAs: the tentacles of chromatin remodeler complexes

B Neve, N Jonckheere, A Vincent… - Cellular and Molecular …, 2021 - Springer
Chromatin remodeler complexes regulate gene transcription, DNA replication and DNA
repair by changing both nucleosome position and post-translational modifications. The …

Keep calm and reboot–how cells restart transcription after DNA damage and DNA repair

LM Donnio, G Giglia‐Mari - FEBS letters, 2025 - Wiley Online Library
The effects of genotoxic agents on DNA and the processes involved in their removal have
been thoroughly studied; however, very little is known about the mechanisms governing the …

The Eyes Absent family: at the intersection of DNA repair, mitosis, and replication

CB Nelson, JK Wells, HA Pickett - DNA repair, 2024 - Elsevier
Abstract The Eyes Absent family (EYA1-4) are a group of dual function proteins that act as
both tyrosine phosphatases and transcriptional co-activators. EYA proteins play a vital role …

The multi-functional eyes absent proteins

RS Hegde, K Roychoudhury… - Critical reviews in …, 2020 - Taylor & Francis
Abstract The Eyes Absent (EYA) proteins are the only known instance of a single
polypeptide housing the following three separable biochemical activities: tyrosine …

The chromatin remodeler RSF1 coordinates epigenetic marks for transcriptional repression and DSB repair

S Min, HS Lee, JH Ji, Y Heo, Y Kim, S Chae… - Nucleic acids …, 2021 - academic.oup.com
DNA lesions impact on local transcription and the damage-induced transcriptional
repression facilitates efficient DNA repair. However, how chromatin dynamics cooperates …