Single-molecule protein sequencing with nanopores

J Ritmejeris, X Chen, C Dekker - Nature Reviews Bioengineering, 2024 - nature.com
Protein sequencing and the identification of post-translational modifications are key to
understanding cellular signalling pathways and metabolic processes in health and disease …

Protein sequencing, one molecule at a time

BM Floyd, EM Marcotte - Annual review of biophysics, 2022 - annualreviews.org
Despite tremendous gains over the past decade, methods for characterizing proteins have
generally lagged behind those for nucleic acids, which are characterized by extremely high …

[HTML][HTML] Recent advances in N-and C-terminus cysteine protein bioconjugation

RJ Spears, V Chudasama - Current Opinion in Chemical Biology, 2023 - Elsevier
Advances in the site-specific chemical modification of proteins, also referred to as protein
bioconjugation, have proved instrumental in revolutionary approaches to designing new …

Tertiary Amine Coupling by Oxidation for Selective Labeling of Dimethyl Lysine Post-Translational Modifications

B Emenike, P Czabala, J Farhi… - Journal of the …, 2024 - ACS Publications
Lysine dimethylation (Kme2) is a crucial post-translational modification (PTM) that regulates
biological processes and is implicated in diseases. There is significant interest in globally …

Site-specific protein labeling: Recent progress

Y Ma, Y Wang, F Wang, S Lu, X Chen - Chinese Chemical Letters, 2024 - Elsevier
Site-specific protein labeling plays important roles in drug discovery and illuminating
biological processes at the molecular level. However, it is challenging to label proteins with …

TICT improved NIR emission and lysosome-specific functional dye visualizing viscosity in disease model

T Zhang, F Huo, C Yin - Sensors and Actuators B: Chemical, 2024 - Elsevier
Since the dependence of ferroptosis on autophagy was discovered, the cross-linking
between ferroptosis and autophagy has received much attention. Studies have shown that …

carba‐Nucleopeptides (cNPs): A Biopharmaceutical Modality Formed through Aqueous Rhodamine B Photoredox Catalysis

JR Immel, S Bloom - Angewandte Chemie International Edition, 2022 - Wiley Online Library
Exchanging the ribose backbone of an oligonucleotide for a peptide can enhance its
physiologic stability and nucleic acid binding affinity. Ordinarily, the eneamino nitrogen atom …

Herding cats: Label-based approaches in protein translocation through nanopore sensors for single-molecule protein sequence analysis

K Motone, N Cardozo, J Nivala - Iscience, 2021 - cell.com
Proteins carry out life's essential functions. Comprehensive proteome analysis technologies
are thus required for a full understanding of the operating principles of biological systems …

A Method for Rigorously Selective Capture and Simultaneous Fluorescent Labeling of N-Terminal Glycine Peptides

H Liu, H Deol, A Raeisbahrami, H Askari… - Journal of the …, 2024 - ACS Publications
Although chemical methods for the selective derivatization of amino acid (AA) side chains in
peptides and proteins are available, selective N-terminal labeling is challenging, especially …

Estimating error rates for single molecule protein sequencing experiments

MB Smith, K VanderVelden, T Blom… - PLOS Computational …, 2024 - journals.plos.org
The practical application of new single molecule protein sequencing (SMPS) technologies
requires accurate estimates of their associated sequencing error rates. Here, we describe …