Evolution of gene duplication in plants

N Panchy, M Lehti-Shiu, SH Shiu - Plant physiology, 2016 - academic.oup.com
Ancient duplication events and a high rate of retention of extant pairs of duplicate genes
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …

Whole-genome duplication and plant macroevolution

JW Clark, PCJ Donoghue - Trends in plant science, 2018 - cell.com
Whole-genome duplication (WGD) is characteristic of almost all fundamental lineages of
land plants. Unfortunately, the timings of WGD events are loosely constrained and …

The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars

J Salojärvi, A Rambani, Z Yu, R Guyot, S Strickler… - Nature …, 2024 - nature.com
Coffea arabica, an allotetraploid hybrid of Coffea eugenioides and Coffea canephora, is the
source of approximately 60% of coffee products worldwide, and its cultivated accessions …

Lipid transfer from plants to arbuscular mycorrhiza fungi

A Keymer, P Pimprikar, V Wewer, C Huber, M Brands… - elife, 2017 - elifesciences.org
Arbuscular mycorrhiza (AM) symbioses contribute to global carbon cycles as plant hosts
divert up to 20% of photosynthate to the obligate biotrophic fungi. Previous studies …

The pineapple genome and the evolution of CAM photosynthesis

R Ming, R VanBuren, CM Wai, H Tang, MC Schatz… - Nature …, 2015 - nature.com
Abstract Pineapple (Ananas comosus (L.) Merr.) is the most economically valuable crop
possessing crassulacean acid metabolism (CAM), a photosynthetic carbon assimilation …

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

Y Wang, H Tang, JD DeBarry, X Tan, J Li… - Nucleic acids …, 2012 - academic.oup.com
MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify
putative homologous chromosomal regions, and align these regions using genes as …

The Amborella Genome and the Evolution of Flowering Plants

Amborella Genome Project, VA Albert, WB Barbazuk… - Science, 2013 - science.org
Introduction Darwin famously characterized the rapid rise and early diversification of
flowering plants (angiosperms) in the fossil record as an “abominable mystery.” Identifying …

Ancestral polyploidy in seed plants and angiosperms

Y Jiao, NJ Wickett, S Ayyampalayam, AS Chanderbali… - Nature, 2011 - nature.com
Abstract Whole-genome duplication (WGD), or polyploidy, followed by gene loss and
diploidization has long been recognized as an important evolutionary force in animals, fungi …

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits

L Hibrand Saint-Oyant, T Ruttink, L Hamama, I Kirov… - Nature plants, 2018 - nature.com
Rose is the world's most important ornamental plant, with economic, cultural and symbolic
value. Roses are cultivated worldwide and sold as garden roses, cut flowers and potted …

Cell-specific pathways recruited for symbiotic nodulation in the Medicago truncatula legume

SA Cervantes-Pérez, S Thibivilliers, C Laffont… - Molecular Plant, 2022 - cell.com
Medicago truncatula is a model legume species that has been studied for decades to
understand the symbiotic relationship between legumes and soil bacteria collectively named …