Molecular network-based intervention brings us closer to ending the HIV pandemic

X Han, B Zhao, M An, P Zhong, H Shang - Frontiers of Medicine, 2020 - Springer
Precise identification of HIV transmission among populations is a key step in public health
responses. However, the HIV transmission network is usually difficult to determine. HIV …

Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics

D Kühnert, R Kouyos, G Shirreff, J Pečerska… - PLoS …, 2018 - journals.plos.org
Drug resistant HIV is a major threat to the long-term efficacy of antiretroviral treatment.
Around 10% of ART-naïve patients in Europe are infected with drug-resistant HIV type 1 …

Viral diversity based on next-generation sequencing of HIV-1 provides precise estimates of infection recency and time since infection

LA Carlisle, T Turk, K Kusejko… - The Journal of …, 2019 - academic.oup.com
Background Human immunodeficiency virus type 1 (HIV-1) genetic diversity increases over
the course of infection and can be used to infer the time since infection and, consequently …

Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study

K Kusejko, C Kadelka, A Marzel, M Battegay… - Virus …, 2018 - academic.oup.com
Age-mixing patterns are of key importance for understanding the dynamics of human
immunodeficiency virus (HIV)-epidemics and target public health interventions. We use the …

Cohort Profile: The Zurich Primary HIV Infection Study

MC Freind, C Tallón de Lara, RD Kouyos… - Microorganisms, 2024 - mdpi.com
The Zurich Primary HIV Infection (ZPHI) study is a longitudinal cohort study established in
2002, aiming to study the clinical, epidemiological, and biological characteristics of primary …

Estimating Re and overdispersion in secondary cases from the size of identical sequence clusters of SARS-CoV-2

EB Hodcroft, MS Wohlfender, RA Neher, J Riou… - medRxiv, 2024 - medrxiv.org
The wealth of genomic data that was generated during the COVID-19 pandemic provides an
exceptional opportunity to obtain information on the transmission of SARS-CoV-2 …

Increasing frequency and transmission of HIV-1 non-B subtypes among men who have sex with men in the Swiss HIV cohort study

JJ Duran Ramirez, T Ballouz, H Nguyen… - The Journal of …, 2022 - academic.oup.com
Abstract Background In Switzerland, HIV-1 transmission among men who have sex with men
(MSM) has been dominated by subtype B, whilst non-B subtypes are commonly attributed to …

Subtype‐specific differences in transmission cluster dynamics of HIV‐1 B and CRF01_AE in New South Wales, Australia

F Di Giallonardo, AN Pinto, P Keen… - Journal of the …, 2021 - Wiley Online Library
Introduction The human immunodeficiency virus 1 (HIV‐1) pandemic is characterized by
numerous distinct sub‐epidemics (clusters) that continually fuel local transmission. The aims …

[HTML][HTML] HIV 传播簇的风险测量及公共卫生应对研究进展

颜欢畅, 刘裕, 唐时幸, 顾菁, 郝元涛 - 中华流行病学杂志, 2023 - html.rhhz.net
开展HIV 传播簇探测, 及时, 精准实施公共卫生应对和干预, 是结束艾滋病流行的重要途径和方法.
传播簇风险测量指标可分为基于传播簇既往增长的指标, 基于传播簇成员特征分析的指标以及 …

Downgrading disease transmission risk estimates using terminal importations

SJ Fox, SE Bellan, TA Perkins… - PLoS neglected …, 2019 - journals.plos.org
As emerging and re-emerging infectious arboviruses like dengue, chikungunya, and Zika
threaten new populations worldwide, officials scramble to assess local severity and …