Reintroducing mothur: 10 years later
PD Schloss - Applied and environmental microbiology, 2020 - Am Soc Microbiol
More than 10 years ago, we published the paper describing the mothur software package in
Applied and Environmental Microbiology. Our goal was to create a comprehensive package …
Applied and Environmental Microbiology. Our goal was to create a comprehensive package …
[HTML][HTML] Mining microbes for mental health: determining the role of microbial metabolic pathways in human brain health and disease
S Spichak, TFS Bastiaanssen, K Berding… - Neuroscience & …, 2021 - Elsevier
There is increasing knowledge regarding the role of the microbiome in modulating brain and
behaviour. Indeed, the actions of microbial metabolites are key for appropriate gut-brain …
behaviour. Indeed, the actions of microbial metabolites are key for appropriate gut-brain …
Parallelization of MAFFT for large-scale multiple sequence alignments
We report an update for the MAFFT multiple sequence alignment program to enable parallel
calculation of large numbers of sequences. The G-INS-1 option of MAFFT was recently …
calculation of large numbers of sequences. The G-INS-1 option of MAFFT was recently …
[HTML][HTML] MiDAS 3: an ecosystem-specific reference database, taxonomy and knowledge platform for activated sludge and anaerobic digesters reveals species-level …
The function of the microbiomes in wastewater treatment systems and anaerobic digesters is
dictated by the physiological activity of their members and complex interactions between …
dictated by the physiological activity of their members and complex interactions between …
[HTML][HTML] Lack of detection of a human placenta microbiome in samples from preterm and term deliveries
Background Historically, the human womb has been thought to be sterile in healthy
pregnancies, but this idea has been challenged by recent studies using DNA sequence …
pregnancies, but this idea has been challenged by recent studies using DNA sequence …
[HTML][HTML] Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling
Background Rhizosphere microbial communities are key regulators of plant performance,
yet few studies have assessed the impact of different management approaches on the …
yet few studies have assessed the impact of different management approaches on the …
[HTML][HTML] A census-based estimate of Earth's bacterial and archaeal diversity
The global diversity of Bacteria and Archaea, the most ancient and most widespread forms
of life on Earth, is a subject of intense controversy. This controversy stems largely from the …
of life on Earth, is a subject of intense controversy. This controversy stems largely from the …
[HTML][HTML] Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages
Background As a recently discovered member of the DPANN superphylum,
Woesearchaeota account for a wide diversity of 16S rRNA gene sequences, but their …
Woesearchaeota account for a wide diversity of 16S rRNA gene sequences, but their …
Redox-active antibiotics enhance phosphorus bioavailability
Microbial production of antibiotics is common, but our understanding of their roles in the
environment is limited. In this study, we explore long-standing observations that microbes …
environment is limited. In this study, we explore long-standing observations that microbes …
[HTML][HTML] Relaxed targeting rules help PIWI proteins silence transposons
I Gainetdinov, J Vega-Badillo, K Cecchini, A Bagci… - Nature, 2023 - nature.com
In eukaryotes, small RNA guides, such as small interfering RNAs and microRNAs, direct
AGO-clade Argonaute proteins to regulate gene expression and defend the genome against …
AGO-clade Argonaute proteins to regulate gene expression and defend the genome against …